Streptomyces lincolnensis: SLINC_5715
Help
Entry
SLINC_5715 CDS
T04801
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sls
Streptomyces lincolnensis
Pathway
sls03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sls00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SLINC_5715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sls03400
]
SLINC_5715
Enzymes [BR:
sls01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SLINC_5715
DNA repair and recombination proteins [BR:
sls03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SLINC_5715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ANS67939
UniProt:
A0A1B1MH56
LinkDB
All DBs
Position
complement(6791637..6792518)
Genome browser
AA seq
293 aa
AA seq
DB search
MTPITEVEGRRLALSNLEKVLYPATGFTKGEVLHYYATTAEVLLPHLRGRSVSFLRYPDG
PDGQVFFTKNVPPGTPDWVTTAEVPRSEGPARMVLVQDLASLMWAANLVTEFHTHQWLVD
TPDEADRLVLDLDPGAPATVVECCEVALWLRERLAADGIEAYPKTAGSKGLHLLAAVRGA
SSDQVSEYAKQLAVEAERAMPRLVVHRMTRNLRPGKVFVDWSQNAARKTTATPYTLRARA
RPLVSAPVTWTEVEECGDPARLDFQAPDIAPRVRDHGDLLAPLLDRQHAGALP
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgatcacagaggtggaggggcgacggctcgcgctcagcaacctggagaaggtg
ctgtatcccgcgaccggtttcaccaagggcgaggtgctgcactactacgcgaccaccgcc
gaggtcctgctgccccatctgcgcgggcggtcggtgtccttcctgcgctatcccgacggc
cccgacggccaggtgttcttcaccaagaacgtcccgcccggtacacccgactgggtcacc
accgccgaggtgccccgctcggaggggccggcccggatggtgctggtgcaggacctggcg
agcctgatgtgggcggcgaacctggtcaccgagttccacacccaccagtggctggtggac
acgcccgacgaggccgaccggctggtgctcgacctggacccgggggcgccggcgacggtc
gtcgagtgctgcgaggtcgccctgtggctgcgcgagcggctggcggcggacggcatcgag
gcgtacccgaagaccgcggggtcgaaggggctgcacctgctggcggccgtacggggggcc
tcgtccgaccaggtttcggagtacgccaagcagctggccgtcgaggcggagcgggcgatg
ccccggttggtcgtgcaccggatgacgcggaacctcaggcccggaaaggtgttcgtggac
tggagccagaacgccgcgcgcaagacgacggccacgccgtacaccctgcgggcccgcgcc
cggccgttggtgtcggcaccggtgacctggacggaggtcgaggagtgcggagaccccgcc
cggctggacttccaggcaccggacatcgcgccccgcgtgcgggaccacggcgatctgctg
gccccgttgctcgaccgacagcacgccggcgcactgccgtga
DBGET
integrated database retrieval system
