Sideroxydans lithotrophicus: Slit_0445
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Entry
Slit_0445 CDS
T01196
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
slt
Sideroxydans lithotrophicus
Brite
KEGG Orthology (KO) [BR:
slt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slt03019
]
Slit_0445
Enzymes [BR:
slt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Slit_0445
Messenger RNA biogenesis [BR:
slt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Slit_0445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
DUF559
OB_NTP_bind
Helicase_C
HA2_C
MTES_1575
DEAD
AAA_22
DUF2726
nSTAND3
AAA_19
T2SSE
PhoH
HA2_N
NACHT
FtsK_SpoIIIE
NTPase_1
TsaE
AAA_23
AAA_25
HHD_RTEL1
Motif
Other DBs
NCBI-ProteinID:
ADE10686
UniProt:
D5CM72
LinkDB
All DBs
Position
449639..454036
Genome browser
AA seq
1465 aa
AA seq
DB search
MNPALSAIAQRRLARIQQLSEIEYPADLPVVARREELAQAIEKNQVVIVCGETGSGKTTQ
LPKICLSLGRGVLGVIGHTQPRRVAARSVGARIAHELKSELGGLVGYKVRFNDKVSPDTC
IKLMTDGILLAEIHHDPLLKQYDTIIIDEAHERSLNIDFLLGYLRQLLPRRPDLKLIITS
ATLDADRFAKHFSSAAISPSPSGRGGGVREDYPKIPETLLSNARELRKNSTDAEQLLWQL
LRSHQLLDHKFRRQHPLGSYILDFYCHETKLAIELDGGQHAEGAQLKHDEMRSAWLKTQG
ITVLRFWNNDVLTNTEGVLQTIFDCLSAHSLTPTPDGTTSHPTKPASGQVVGYLPEGEGL
KPAPIIQVSGRTYPVEVRYRPPQQNEEGDTQDVPQAVCSALDELSIGGLRGDVLVFLPGE
REIRDTAEALRKHQHKGIEILPLFSRLSIAEQDRVFKPASGMRRVVLATNVAETSLTVPN
IGYVIDSGLARINRYSVRQKVEQLRIENIARAAANQRAGRCGRVMSGVCIRLYEEADFLQ
RPEFTDAEIFRVSLATVILRMSALGLGEVEEFPFIEPPGSRAIADGYQLLTELGAIAESV
PSPLAPLPKGEGNKLPPPLGEGWGEGAAVVKTAIRQLTPLGHELAKLPLDPKVARLLLAG
RQYQCLNEILIIASALALQDPRDRPSDRREAADAAHQRFNDERSDFLAYIKLWAWFQDAI
RHKKTNKLWANECREKFLSPLRLREWHELHQQLHAQVSEMGMRFNEQPATYEQIHKALLT
GLLGNIGCKGVDKEPYYLGPREIKFFIASNSVLAKKGTKWVVAAEIVETTRLFARCVARI
EPEWLEEVGAHLIKRSYFDPHWEKKAGQVAAWERSTLYGLLINPKKRVHYGPMNPQESHE
VFIREALVNGEFNTQAPFFAHNQKLIADIEALEHKARRPDVLVDDELIFAFYDARIPAGI
HNGAAFEHWRKEAEREQPKLLYLKKDDLMRHEAAGITTEQFPPQLLMNNVSYALAYNFAP
GKSDDGVTLTVPQALLNQVSAARCEWLVPGILAEKVVQLVKSLPQKLRRHCVPVPEFAAE
FCASVKPSDMPLLQALARYIREQKQLDVPLDAFRLEQLPAHQLMNFRVVDEHGRQLGMSR
NFAALRGEWAISLTPALSQRERESGQRTGSSPSPSGRGVGVREELKRHTSWDFGDFKPTR
TEPRAGQTVTVFNALVDEGDAVTLQAFDTQDEAKAAHRLGLRRMFMLALKEQVKYLEKNL
PGLQAMAMQFLPFGSQQDLQRQILAVTFDRCCLNDPWPESEKEFATRCKEAKARLNLVAQ
EIARLVGAVLAEYHAMQKSLPGFKAHAQVLQDIRNQCEWLLGKEWVARTPYERMQHMPRY
LKAVNVRLEKLRANPARDAQNLAQMGPLLQQWQRKLSAQHGEADARLQDFGWMMQELRVS
LFAQELKTPVIVSVKRLEKMLAGLS
NT seq
4398 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccgctttatccgccatcgcccagcgccgcctggcgcgcatccagcaactctcc
gagatcgaataccccgccgacctgcccgtggtggcgcggcgcgaggaattggcgcaggcc
attgagaagaaccaggtggtcatcgtctgcggcgagaccggctcgggcaagaccacacaa
ttgcccaagatctgcctgagtttggggcgcggcgtgctcggtgtgatcggccacacccag
ccgcgccgggtggcggcacgctcggtaggcgcgcgcatcgcgcatgaactcaagagcgaa
ctcggcggcctggtcggctacaaggtgcgcttcaacgacaaggtctcgcccgacacctgc
atcaagctgatgaccgacggcatcctgctggccgagatccaccacgacccgctactcaaa
caatacgacaccatcatcatcgacgaagcgcacgagcgctcgctgaacatagacttcctg
ctcggctacctgcgccagctgctgccgcgccgtcccgacctgaagctcatcatcacctcg
gcgacgctggatgcggataggtttgcgaagcatttttccagtgcggcaattagcccctcg
ccctctgggagagggggtggggtgagggaggactacccgaaaatccctgaaaccttgctg
agtaatgcacgagagttgcgcaagaactcaacagatgcggagcagttgctttggcaatta
ttgagaagtcaccaactgctcgatcacaaattccgtcgtcagcatcctttgggttcgtac
attctcgatttctattgccatgaaacaaagctggcgattgagctggatggcgggcagcac
gcggagggtgctcagctcaagcatgatgaaatgcgtagtgcgtggttgaaaacacagggg
attactgtactgcgtttttggaataacgatgtgttgacgaataccgagggggttctgcaa
acgatatttgattgcttgagtgcgcattccctcaccccaacccctgatggaactactagc
catccgactaagcccgcaagcgggcaagtcgttggttatctcccagagggagaggggcta
aaacccgcccccatcattcaagtctccggtcgtacctatccggtcgaggtgcgctaccgt
ccgccgcagcagaacgaggaaggcgacacgcaggatgtgccgcaggcggtatgcagcgcg
ttggatgaattgagcatcggcggcctcaggggcgacgtgctggtattcctgcccggcgag
cgcgagatacgcgacaccgccgaggcgctgcgcaaacaccagcacaagggcatcgagata
ttgccgctgttctcgcgcctgtccatcgccgagcaggaccgcgtgttcaagcccgcttcc
ggcatgcgccgtgtggtgctggcgaccaacgtggccgagacttcgctcaccgtccccaac
atcggctatgtgatcgactcgggtcttgcgcgcatcaaccgctacagcgtgcggcagaag
gtggagcagctgcgcatcgagaacatcgcacgcgccgctgccaaccagcgcgccggtcgt
tgcggccgggtgatgagcggcgtctgcatccgcctctacgaagaggcggatttcctgcag
cgccccgagttcaccgacgccgagatcttccgcgtgtcgctggccaccgtcattctgcgc
atgagcgcgttggggttgggtgaggtggaggagtttccgttcatcgaacctccgggttcg
cgcgccattgccgatggctaccagttgctgacggagttgggtgcaattgcggagagtgtt
ccctcacccctagcccctctcccaaagggagaggggaataaactccctccccctctgggg
gagggctggggtgagggagcagccgtagtgaaaaccgctattcgtcagcttacgccgctg
ggccacgaactggccaagctgccgctcgaccccaaggtggcgcggctgttgctggcgggg
cggcaataccagtgcctcaacgagatactcatcatcgccagcgcgctggccttgcaggat
ccgcgcgaccgcccgtcggaccggcgcgaagcggcggatgcggcgcaccagcgcttcaac
gacgagcgctcggatttccttgcctacatcaagctgtgggcgtggttccaggatgcgatc
aggcacaagaagaccaacaagctgtgggcgaacgaatgccgcgaaaagttcctgtcgccg
ctgcgcctgcgcgaatggcatgagctgcatcagcagttgcatgcgcaggtgtcggagatg
ggtatgcgtttcaatgagcagccggccacctacgaacagatccacaaggcgctgctgacc
ggcctgctcggcaacatcggttgcaagggtgtggacaaggagccgtattacctcggcccg
cgcgagatcaagttcttcatcgcgtcgaattcggtgctggcgaagaagggtacgaagtgg
gtggtggcggcggagatcgtcgagacgaccagactgttcgcgcgctgcgtggcgcgcatc
gaaccggagtggctggaagaggttggtgcgcacctgatcaagcgcagctatttcgatccg
cactgggagaagaaggcggggcaggtggcggcgtgggagcgcagcaccctgtatggcctg
ctcatcaatccgaagaagcgcgtgcactacgggccgatgaatccgcaggagtcgcacgag
gtgttcatccgcgaggcgctggtgaacggcgagttcaacacgcaggcgccgttcttcgcg
cacaaccagaaactcatcgccgacatcgaagcgctggaacacaaggcgcgccgacctgat
gtgctggtggacgacgaactgatcttcgccttttatgatgcacgcatcccggccggcatc
cacaacggcgcggcgttcgagcactggcgcaaggaagccgagcgcgagcagcccaagctg
ctgtacctgaaaaaagatgacctgatgcgccacgaggcggccggcatcaccaccgaacag
ttcccgccgcaactgctgatgaacaatgtcagctacgcgctggcctacaactttgcgccg
ggcaagagcgacgacggcgtcacgctgaccgtgccgcaggccttgctcaaccaggtatcg
gcggcgcgctgcgaatggctggtgcctggcattctggcggagaaggtcgtgcaactggtc
aagtcgctgccgcagaaactgcgacgccattgcgtgccggtgccggagttcgcggcggaa
ttctgtgcgagcgtgaagccttctgatatgccgctgctgcaggcgttggcacgctacatc
cgcgagcagaagcagctagacgtgccgctggatgcgttccggctggagcaactgccggcg
catcagttgatgaacttccgcgtggtggatgagcatgggcgacagctcggcatgtcgcgc
aattttgctgctttgcgcggggagtgggctatttccctcaccccagccctctcccagagg
gagagggagtcagggcagcgcaccgggtctagcccctcgccctctgggagaggggttggg
gtgagggaagagctgaagcgccacacctcttgggatttcggcgacttcaaaccaacccgc
accgaaccccgcgccggccagaccgtcaccgtgttcaatgcgctggtggacgaaggcgat
gcagtgacgctgcaggctttcgatacgcaggatgaagcaaaagccgcgcaccgcctgggg
ttgcggcgcatgttcatgctggcgctgaaggaacaggtgaaatacctggagaagaatctg
cccggcctgcaggcgatggcgatgcaattcctgccgttcggtagccagcaagacctgcag
cggcagatcctcgcggtgacgttcgaccgctgctgcctcaacgatccgtggccggaaagc
gagaaggagtttgccacgcgctgcaaggaggcgaaggcgcgcctgaacctggtggcgcag
gagatcgcgcggctggttggcgcggtactggccgaataccatgcaatgcaaaaatccctg
ccgggtttcaaggcgcatgcacaggtattgcaggacatccgcaaccagtgcgaatggttg
ctgggcaaagagtgggtggcgcgcacgccctacgaacgcatgcagcacatgccgcgctac
ctgaaagcggtcaacgtgcggctggaaaagctgcgcgccaacccggcacgcgatgcgcag
aatctggcgcagatgggtccattgttgcaacaatggcagcgcaaactgtcggcgcagcat
ggtgaagccgatgcgcggctgcaggacttcggctggatgatgcaggagctgcgcgtgtcg
ctgttcgcgcaggaattgaagacgccggtgatcgtgtcggtgaagcgtctggaaaagatg
ctggcgggactaagttaa
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integrated database retrieval system
