Sideroxydans lithotrophicus: Slit_0508
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Entry
Slit_0508 CDS
T01196
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
slt
Sideroxydans lithotrophicus
Brite
KEGG Orthology (KO) [BR:
slt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
slt03016
]
Slit_0508
Enzymes [BR:
slt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Slit_0508
Transfer RNA biogenesis [BR:
slt03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Slit_0508
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ADE10748
UniProt:
D5CMR2
LinkDB
All DBs
Position
complement(515077..516927)
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AA seq
616 aa
AA seq
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MNIFYEEDGGFKVGNILADNTTSLQVENTHGKRSKIKSANVMLRFAQPGLSEFLTQAEQV
AADIDVEFLWEASPPDEFEFGTLAQEYFGHVPNPVEAAGALIRLHSSPMHFYKKGKGRYK
AAPPDALKSALASVEKKRLQAELQTRYTEQLSTFQLPAEFADHLSMILYKPDRNTIEVKA
VEAACAATHLSAAHLLEHCGALPSTHDYHLNKFLFENFPRGTGFPDVTVEAHPELPLAAV
NAFSIDDASTTEIDDAFSVEKLANGNWRIGIHIAAPALGIAPNSPIDAIAAQRMSTVYMP
GDKITMLPDSVVQAFTLCADKVCPALSLYVEADAATLAIVGSESRVERLHIASNLRHDTL
EPLFNEETLAAGKLDYDHAPELRLLWDFVQKLEAARGKSADNSTQQIDYTFHVENDRITI
GHRLRGSPIDKVVSELMILANSSWGKLLDDHDVAGIYRTQNNGKVKMSTVAAPHQGLGVA
HYAWSSSPLRRYVDLVNQRQIISVLRAEPPVYARNDTALFSILRDFDTAYTTYNEFQRGM
ERYWCLRWLLQEDVKQADALVLRENLVKFADIPLIGRIPSLPEMPPNTRVTLEITSIDLL
DLDFDARYLSSMEVPA
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgaacatattttacgaagaagacggtggtttcaaggtcggcaatatccttgccgataac
accacctccctgcaggtcgagaacacccacggcaagcgcagcaagatcaaatcagccaac
gtcatgctgcgtttcgcccagcccggactgtccgaattcctgacccaggcggagcaagtg
gccgccgacatcgacgttgagttcctgtgggaagcttcgccgccggacgagttcgagttc
ggcacgctggcacaggagtatttcggccacgtccccaatcccgtcgaggcggcaggcgca
ttgatccgcctgcactcctcgcccatgcatttctacaagaaaggcaaagggcgctacaag
gcggcaccgccggatgcgctgaagtcggcactcgccagcgtcgagaaaaagcgcctgcag
gcggagctgcaaacccgctacaccgagcaactcagcactttccagttgcctgccgaattt
gccgaccacctgagcatgatcctgtacaaaccggatcgcaacaccatcgaagtcaaggca
gtggaagctgcctgcgccgccacgcacctgtccgcggcgcacttgctggaacactgcggc
gcgctgccctccacgcacgactatcacctgaacaagttcctgttcgagaacttcccgcgc
ggcaccggcttcccggatgtcacggtggaggcacaccccgaactgcccctggcagccgtc
aacgccttcagcatcgacgacgccagcaccaccgagatcgacgacgcgttctcggtcgaa
aagctggcgaacggcaactggcgcatcggcatccacatcgccgcgcccgcgctgggcatc
gcacccaattcgcccatcgacgccatcgccgcacagcgcatgtccaccgtgtacatgccg
ggcgacaagatcaccatgttgccggacagcgtggtgcaagccttcacgctgtgtgccgac
aaggtctgccccgcgctctcgctgtatgtggaagcagatgccgccacgctcgccatcgtg
ggcagcgaaagccgcgtcgagcgcctgcacatcgcctccaacctgcgccacgatacgctg
gaaccgctattcaacgaggagacgctggcggctggcaaactcgattacgatcacgccccc
gaactcaggctgctgtgggatttcgtgcagaagctggaagcggcgcgcggcaagtccgcc
gacaacagcacccagcagatcgattacaccttccatgtggagaacgaccgcatcaccatc
ggccaccgcctgcgcggctcgcccatcgacaaggtggtgtcggaactgatgatcctcgcc
aacagcagctgggggaaattgctcgacgaccacgatgtcgccggcatctaccgcacgcag
aacaacggcaaggtgaagatgagcaccgtcgccgcgccgcaccaggggctgggcgtggcg
cactatgcctggtcgagttcgccgttgcgccgctacgtcgacctggtgaaccagcgccag
atcatcagcgtattgcgcgccgaaccgccggtctacgccaggaacgataccgcgctgttc
tccatcctgcgcgacttcgacaccgcctataccacctacaatgaattccagcgcggcatg
gaacgctactggtgcctgcgctggctattgcaggaagacgtgaagcaggccgatgcgctg
gtgctgcgcgagaacctggtcaagttcgccgacatcccgctgatcggacgcatcccgtcg
ttgccggaaatgccacccaacaccagggtgacgctcgagataacctcgatcgacctgctc
gacctggatttcgatgcccgctatctgtccagcatggaagtcccggcatga
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