Sideroxydans lithotrophicus: Slit_0667
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Entry
Slit_0667 CDS
T01196
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
slt
Sideroxydans lithotrophicus
Brite
KEGG Orthology (KO) [BR:
slt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
slt03009
]
Slit_0667
Enzymes [BR:
slt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Slit_0667
Ribosome biogenesis [BR:
slt03009
]
Prokaryotic type
rRNA helicases
Slit_0667
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
P-loop_SecA
CMS1
AAA_22
YlmH_RBD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ADE10907
UniProt:
D5CNJ4
LinkDB
All DBs
Position
complement(671609..673036)
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AA seq
475 aa
AA seq
DB search
MNKTTPPAPTPAAAATGRPFNELPLSPALLANLQQLEYRTMTPIQAESLPITLAGNDLIA
QAKTGSGKTAAFALPLLTNLNPRRFAVQAMVLCPTRELADQVTQELRRLARFADNIKILS
LVGGSTMRPQRDSLEHGAHIVVGTPGRIMDHLERGSLKLDALNTLVLDEADRMLDMGFYD
DIAFVVKHCPAQRQTMLFSATYPEGIARLAQKFMRKPQEVKLPEQHEGSKIRQRFYEVKH
EERLQAVATLLKHYRPVSTLAFCNTKQQCRDLLDVLHAEGIHALTLNGDMEQRERDQVLI
QFANRSCSVLVATDVAARGLDIAQLEAVINVDVTPDPEIHIHRIGRTGRADAEGWALSLA
SPADMHRISNIAKMVGSEPEWHTLESVKRANDKPLIPPMVTLQILGGRKEKIRPGDVLGA
LTGEAGFTREQVGKITVTDMSTYVAVARNIAREAVKRLSAGKVKGKTVKVRALED
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaactaccccacccgccccaacacccgccgccgccgcgaccggccgccccttc
aacgaactgccgctgtcgcccgcgttgctggcgaacctgcagcagctcgaataccgcacg
atgacgccgatccaggccgagagcctgccgatcacgctggccgggaacgacctcatcgcg
caggccaagaccggcagcggcaagaccgccgcgttcgccctgccgctgctcaccaacctc
aacccgcgtcgcttcgccgtgcaggccatggtgctgtgccccacgcgcgagctggccgac
caagtgacgcaggagctgcgccggctggcgcgcttcgccgacaacatcaagatattgtcg
ctggtcggcggcagcaccatgcgcccgcagcgcgacagcctggagcacggtgcgcacatc
gtcgtcggcacgccgggccgcatcatggatcacctcgaacgcggcagcctcaaactggat
gcactcaatacgctggtgctggacgaagcggatcgcatgctggacatgggcttctacgac
gacatcgccttcgtggtgaagcactgcccggcccagcgccagaccatgctgttctcggcg
acctacccggaaggcatcgcgcggctggcgcagaaattcatgcgcaagccgcaggaggtg
aaactgccggaacagcacgagggcagcaagatccgccagcgcttctacgaggtgaaacac
gaagagcgcctgcaggccgtcgccaccctgctcaagcattaccgcccagtcagtacgctg
gccttttgcaacaccaagcagcaatgtcgcgatctgctcgacgtgctgcatgccgaaggc
atacatgcgctgacgctgaacggcgacatggaacagcgcgaacgcgaccaggtgctgatc
cagttcgccaaccgcagctgctcggtgctggtcgccacggacgtggccgcacgtggcctc
gacatcgcgcaactcgaagccgtcatcaatgtcgacgtcacgcccgatccggagatccac
atccaccgcatcggccgcaccggacgcgccgacgcagagggttgggcgctgagcctggcc
agcccggccgacatgcaccgcatctccaacatcgccaagatggtgggcagcgaaccggag
tggcacacgctggaatcggtgaagcgcgcaaacgacaaaccgctgatcccgccgatggtg
acgctgcagatcctcggcggccgcaaggaaaagatccgccccggcgatgtgctgggcgcc
ttgaccggcgaagccggattcacccgcgaacaggtcggcaagatcaccgtgacagatatg
tccacttacgttgccgtcgcgcgcaacatcgcgcgcgaggcagtgaagcgattgtcggca
ggaaaagtgaaaggcaagacggtgaaggtgcgcgcgctggaagattga
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