Sideroxydans lithotrophicus: Slit_0760
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Entry
Slit_0760 CDS
T01196
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
slt
Sideroxydans lithotrophicus
Pathway
slt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
slt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Slit_0760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slt03021
]
Slit_0760
03400 DNA repair and recombination proteins [BR:
slt03400
]
Slit_0760
Enzymes [BR:
slt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Slit_0760
Transcription machinery [BR:
slt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Slit_0760
DNA repair and recombination proteins [BR:
slt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Slit_0760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
ADE10999
UniProt:
D5CP58
LinkDB
All DBs
Position
757868..761938
Genome browser
AA seq
1356 aa
AA seq
DB search
MSYSFTEKKRIRKSFAKRVGALPVPFLLSTQLESYSDFLQAWVAPEQRKNEGLQAAFNSI
FPIESHTKFARLDFVSYTLGMPPFDVRECQQRGLTYASPLRARVRLTILDKEASKPTVKE
VKEQEVYMGEIPLMTNTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV
IPYRGSWLDFEFDAKDYVYFRIDRRRKMPVTILLKSLGYTPEQILQMFFQFDTFHFGKKG
IQFEVVPERLRGEIARFDIEGKGGKLIVAKDKRITVRHIREMQEAGIDKLTVGTDFLVGR
VLAHNIVDKDSGEIIANANDEITETLLDKLEAAGIAKINTLYTNDLDQGGFISQTLRTDE
TTDQWTARVAIYRMMRPGEPPTEDAVEALFNGLFFNEDRYDLSAVGRMKFNRRVGREELT
GAVTLSNEDIVEVIRILVELRNGRGEIDDIDHLGNRRVRAVGELAENQFRTGLARVERAV
KERLGQAEADNLMPHDLINAKPISAAVKEFFGSSQLSQFMDQTNPLAEVTHKRRISALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARTNEYGFIETPYRRVV
KSRATDDVDYLSAIEEGKFTIAQANAELDKKGHFTNDIVSARQHNEFVLAEPDKLEYMDV
APAQVVSVAASLIPFLEHDDANRALMGANMQRQAVPVLRAEKALVGTGIERTVAVDSGTA
VQAWRGGRVDYVDSGRIVVRVNDDETTAGEVGVDIYNLTKYTRSNQNTNINQRPLVRVGD
VIARGDVVADGASTDMGELALGQNMMIAFMPWNGYNFEDSILISERVVAEDRFTSIHIEE
LTVMARDTKLGTEEITRDIPNLSEAQMARLDECGIVHIGAEVGVGDVLVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVKAGISGTVIDVQVFTREGLQRDKRAQQIIDDELSR
YKKDLADQMRIVEADLFARLEKLLHNKVANGGPKKLAKGTKLNKEYLHSIEHHQWFDIRV
ADDEVAAQMEQVKEALAQKRVEFDAAFELKKKKLTQGDELQAGVQKMVKVYVAVKRRLQP
GDKMAGRHGNKGVVSRIVPVEDMPRMADGTPVEVVLNPLGVPSRMNIGQVLEVHLGWAAK
GLGKKINQMLEAEAKIADVRKFLGKIYKGDQADEIATFTDEEVVELCRNLKAGVPFATPV
FDGASEEEIKDLLELADLPRSGQIQLYDGRTGDAFDRKVTVGYMHVLKLHHLVDDKMHAR
STGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKVYE
NIVKGDHKIDAGMPESFNVLTKEIRSLGIDIDLERH
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atgagctattcttttaccgaaaaaaaacgtattcgtaaaagttttgcgaagcgcgtcggc
gctttgccggtgccgtttttgttgtccacccagttggaatcctacagcgatttcctgcag
gcgtgggtcgcacccgaacaacgcaagaacgaaggcctgcaagccgccttcaattccatc
ttcccgatcgagagccacaccaagttcgcgcgcctggacttcgtcagctatacgctgggt
atgccgccgttcgatgtgcgtgaatgccagcaacgcggtttgacctatgcttcgccgttg
cgtgctcgtgtgcgcctgaccattctggacaaggaagcctccaagccgaccgtgaaggag
gtgaaggagcaggaagtctatatgggcgagatcccgttgatgaccaataccggctcgttc
gtgatcaacggcaccgagcgcgtgatcgtctcgcagttgcaccgttctcccggcgtgttc
ttcgagcatgaccgcggcaagacccactcttccggcaagctgctgttctccgcgcgcgtg
attccctaccgtggttcgtggctggacttcgagttcgacgccaaggattacgtctacttc
cgtatcgaccgccgccgcaagatgccggtgacgatcctgctgaagtcgctgggctataca
ccggaacagatcctgcagatgttcttccagttcgataccttccatttcggtaagaagggc
atccagttcgaggtggtgccagagcgcttgcgcggcgagattgcgcgcttcgatatcgaa
ggcaagggcggcaagctcatcgtcgccaaggataagcgcatcaccgtgcgccatatccgc
gagatgcaggaggccggcatcgacaagctgaccgtgggtacggattttctggttggccgg
gtattggcgcacaacatcgtggacaaggacagcggcgagatcatcgccaatgccaacgac
gagatcaccgagactttgctggacaagctggaagctgcgggtatcgccaagatcaatacg
ctgtacaccaacgacttggaccagggcggtttcatttcgcagaccttgcgtaccgacgag
acgactgaccagtggacggcgcgcgtggctatctaccgcatgatgcgtcccggcgagccg
cccaccgaagatgcagtggaggcgttgttcaacggcttgttcttcaacgaagatcgctat
gacctgtcggcagtcggtcgcatgaagttcaatcgccgcgtgggtcgcgaggagttgact
ggtgctgtcactctgtccaacgaagacatcgtggaagtgatccgcatcctggtcgagttg
cgcaacggtcgcggcgagatcgacgacatcgaccacctgggtaaccgccgcgtgcgcgcc
gtgggcgaattggccgagaaccagttccgtaccggtctggctcgtgtcgagcgcgccgtc
aaggagcgtctgggccaggccgaagccgacaacctgatgccgcacgacctgatcaacgcc
aagccgatctccgctgcagtcaaggagttcttcggttcgtcgcaactgtcgcagttcatg
gaccagaccaacccgctggcggaagtgacgcacaagcgtcgtatttctgcgctgggaccg
ggcggtctgacccgtgagcgcgccggcttcgaagtgcgcgacgtgcacccgacccactat
ggccgcgtgtgcccgatcgagacaccggaaggtccgaacatcggcctgatcaactcgctg
gcgctgtatgcgcgcaccaacgaatacggcttcatcgagacgccgtatcgccgcgtagtg
aagagccgcgccactgacgacgtggactacctgtctgcgatcgaagaaggcaagttcacc
atcgcgcaggcgaatgccgaactggacaagaagggccacttcaccaacgacatcgtgtct
gcacgtcaacacaacgagttcgtgctggccgagccggacaagctggaatacatggacgtg
gcgccggcacaggtggtgtccgtggctgcttcgctgattccgttcctggagcacgatgac
gcgaaccgtgccttgatgggcgccaacatgcaacgccaggcagtgcctgtgctgcgtgcc
gagaaggcattggtcggtaccggtatcgagcgcaccgtggcggtcgactccggtacggct
gtacaagcctggcgcggcggtcgcgtggactatgtggattccggccgtatcgtggtgcgc
gtcaacgacgacgaaaccaccgcgggcgaagtcggcgtggacatctacaacctgaccaag
tacacccgttccaaccagaacaccaacatcaaccagcgtccgctggtgcgcgtgggcgat
gtgatcgcccgcggcgacgtggtggctgacggagcttcgactgacatgggcgaattggcg
ctgggtcagaacatgatgatcgcattcatgccgtggaacggctacaacttcgaggactcg
atcctgatttccgagcgcgtggtcgcggaagaccgtttcacttcgatccatatcgaagag
ttgacggtgatggctcgcgacaccaagctgggcaccgaagaaattacccgcgacatcccg
aacctgtcggaagcgcagatggcgcgtctggacgagtgcggcatcgtgcatatcggcgcc
gaagtcggcgtgggtgacgtgctggtgggcaaggttacccccaagggcgagacgcaactg
acgccggaagagaaactgctgcgcgcgatcttcggcgagaaggcttccgatgtgaaggac
accagcttgcgcgtgaaggccggcatctccggtaccgtcatcgacgtgcaagtgttcacc
cgcgaaggcttgcaacgcgacaagcgcgcgcaacagatcatcgacgatgaactgtcgcgc
tacaagaaagacctggccgaccagatgcgtatcgtcgaggctgacttgtttgcccgtctg
gagaagttgctgcacaacaaggtcgccaatggcggtccgaagaaactggccaagggtacc
aagctgaacaaggaatacctgcacagcatcgagcaccaccagtggttcgatatccgcgtt
gccgacgatgaggtggctgcgcagatggagcaagtcaaggaagcgctggcacagaagcgt
gtggaattcgatgcggcgttcgaactgaagaaaaagaaactgacccagggcgacgagttg
caagccggcgtgcagaagatggtcaaggtgtatgtggcggttaaacgccgcctgcagccc
ggcgacaagatggcgggtcgccacggaaacaagggtgtggtgtcacgcatcgtgccggtg
gaagacatgccgcgcatggccgacggtacgccggtggaagtggtgctgaacccgctgggc
gtgccgtcgcgtatgaacatcggacaggtgctggaagtgcacttgggctgggcggccaag
gggctgggcaagaagatcaaccagatgctggaagctgaggccaagatcgccgatgtgcgc
aaattcctcggcaagatatacaagggcgaccaggccgacgagatcgcgactttcaccgac
gaggaggttgtcgagttgtgccgcaacctgaaggccggtgtgccattcgcgacccccgtg
ttcgacggagccagcgaagaagagatcaaggatctgctggagctggccgatctgccgcgt
tccggccagatccagctgtacgacggacgcaccggcgatgccttcgatcgcaaggttacc
gtgggttacatgcatgtgctgaaactgcaccacctggtcgacgacaagatgcacgcgcgt
tccactggtccttacagcctggtcacgcagcagcctctgggcggcaaggcgcagttcggt
ggtcaacgtttcggtgagatggaagtctgggcgctggaggcatacggtgcggcatacacg
ctacaggagatgctcacggtcaagtcagatgacgtcaacggacgtaccaaggtgtacgag
aacatcgtcaagggcgatcacaagatcgatgccggcatgccggagtcgttcaacgtgctc
accaaggaaatccgctctttgggtatcgatatcgatctggaacggcactga
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integrated database retrieval system
