Sideroxydans lithotrophicus: Slit_1010
Help
Entry
Slit_1010 CDS
T01196
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
slt
Sideroxydans lithotrophicus
Pathway
slt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Slit_1010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slt03021
]
Slit_1010
03019 Messenger RNA biogenesis [BR:
slt03019
]
Slit_1010
Transcription machinery [BR:
slt03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Slit_1010
Messenger RNA biogenesis [BR:
slt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Slit_1010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
S1CSD-TOTE-2
NACHT
Mor
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADE11248
UniProt:
D5CQL2
LinkDB
All DBs
Position
complement(987016..988272)
Genome browser
AA seq
418 aa
AA seq
DB search
MHLSDLKTKHITELVEMATANQIDNANRMRKQDLIFALLKNQAKKGESIFGEGTLEVLPD
GFGFLRSPDTSYLAGPDDIYVSPSQVRRFNLHTGDSIEGEIRTPKEGERYVALVKVDKVN
GEPPENAKNKILFENLTPLFPTQHMTLERDIRAEENITGRIIDIVAPIGKGQRGLLVASP
KSGKTVMLQHIAHSIASNNPDAILIVLLIDERPEEVTEMSRTVRGEVVASTFDEPATRHV
QVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALQRPKRF
FGAARNVEEGGSLTIIATALVDTGSRMDDVIYEEFKGTGNMEIHLDRRMAEKRIYPAINV
NRSGTRKEELLIKQDLLQRIWVLRKLLYPMDELEAMEFLLDKVKATKNNAEFFDSMKR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcacttatcagacctcaagaccaaacacatcaccgaactggtggaaatggccactgcc
aatcaaatagacaatgccaaccgcatgcgcaagcaggacctgatcttcgccctgttgaag
aaccaggcgaagaaaggcgaaagcatcttcggggaaggcactctggaagtgctgccggat
ggtttcggtttcctgcgatcaccggatacttcctatttggccggtccggacgacatctac
gtcagccccagtcaggtacgccgcttcaatctgcatactggcgactcgatcgagggcgag
atacggacaccgaaagaaggtgagcgctatgtggccctggtcaaggtggacaaggtcaac
ggcgagccgcccgagaacgccaagaacaagatcctgttcgagaacctgaccccgctgttc
ccgacccagcacatgacgctggagcgcgacattcgcgccgaggagaacatcaccggacgc
atcatcgacatcgtggctccaatcggcaaaggccagcgtggcctgctggtcgcttcgccc
aagtccggcaaaacggttatgttgcagcatatcgcccactccatcgcgtcgaacaacccg
gacgcaatcctgatcgttttgctgatcgacgagcgccccgaagaggtgaccgagatgagc
cgcaccgtccgcggcgaagtggtcgcctccaccttcgacgaaccggccacgcgtcatgtg
caagtcgccgagatggtgctggaaaaagccaaacgcctggtcgagcacaaaaaggatgtg
gtcatcctgctcgattccatcacccgtctggcgcgcgcctacaacaccgtcattccctct
tccggcaaggtgctgaccggcggtgtggatgccaatgccctgcagcgccccaagcgcttc
ttcggcgcggcacgcaatgtcgaggaaggcggttcgctgaccatcatcgccaccgcgctg
gttgataccggcagccgcatggacgacgtgatctacgaagaattcaagggcaccggcaac
atggagatccatctggatcgccgcatggccgaaaaacgcatctatccggccatcaacgtc
aaccgctccggcacccgcaaggaagaactgctcatcaagcaggacctgctgcagcgcatc
tgggtactgcgcaagctgctttaccccatggacgaactggaagcgatggaattccttctg
gacaaggtcaaggcaaccaagaacaacgccgaattctttgattcgatgaaacgttaa
DBGET
integrated database retrieval system
