Sideroxydans lithotrophicus: Slit_1427
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Entry
Slit_1427 CDS
T01196
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
slt
Sideroxydans lithotrophicus
Pathway
slt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Slit_1427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slt03019
]
Slit_1427
03016 Transfer RNA biogenesis [BR:
slt03016
]
Slit_1427
Enzymes [BR:
slt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Slit_1427
Messenger RNA biogenesis [BR:
slt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Slit_1427
Transfer RNA biogenesis [BR:
slt03016
]
Prokaryotic type
tRNA degradation factors
Slit_1427
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
ADE11664
UniProt:
D5CRS8
LinkDB
All DBs
Position
1417706..1420027
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AA seq
773 aa
AA seq
DB search
MTKKKKNIRELDPFLEREREQYEQPLPSREYILQILAEKGVPLEQDELCVLLQIEHHEQD
LFNRRLRAMERDGQIMRNRKRAICVVDKLDLIKGKVQGHPDGFGFLIPEDGSPDLVLSAK
EMHKALHGDTVMARIGGEDRRGRREASIVEVLEPANTRVVGRLYEEHGIQFVVAENRRIS
QDFLVAPGESGGAKAGQVVMLEIMQQPSKHAQPIGRIVEVLGNYADPGMEIEIALRKHDL
PNEFPHDAEKQAKAFSPEVKPADYAGRESVAQLPLVTIDGETARDFDDAVYCEPNAKGFR
LVVAIADVSAYVKSGDALDKEAINRGNSVYFPRRVIPMLPEELSNGLCSLNPNVERLCMV
CDMQISADGEIQKHRFYPSVMFSHARLTYTKVADMLENPQGENAREYAAVLPHINNLYKL
FQTLLQAREKRGAIDFETVETQMIFNAQGKIEKIVPVVRNDAHKLIEECMLAANVCAAAF
LKEHDHPVLYRVHEGPTPEKLEAVREFFKEFGLQLGGGDDPQASDYSKLLKQIKGRPDAG
LLQTVMLRSLRQAVYAPENVGHFGLGYEAYAHFTSPIRRYPDLLVHRAIKAVLEGKQYKP
KLKWAELGVHCSMTERRADDATRDVEAWLKCFYMRDHLGSVFDGSISSVTGFGLFVALDE
LYVEGLVHVSELGADYYHFDPAKHQMLGERTGKRYRLGDRVRVKVVRVDMESTKIDFVLE
TGPAASGSDEASGIQGIDVGAWGAASPKKAKITEKSGKTSKSPKTGKSGKRHG
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagaagaaaaaaaatatccgcgaactcgacccgtttctggaacgcgagcgcgaa
caatacgaacaacccctgccgagccgcgaatatatcctgcagatattggcggaaaaaggt
gtcccgctggaacaggacgagttatgtgtcctgctgcagatcgagcaccacgagcaggat
ctcttcaatcgccgcctgcgcgccatggagcgcgacggccagatcatgcgcaaccgcaag
cgcgccatctgcgtggtggacaagcttgacctgatcaagggcaaggtgcagggccatccc
gatggattcggtttcctgatcccggaagacggtagcccggaccttgttctgagcgccaag
gagatgcacaaggcgctgcacggcgacaccgtgatggcgcgcatcggcggtgaggatagg
cgcggccgccgcgaggccagcatcgtcgaggtgctggaaccagccaatacgcgggtggtt
gggcgactgtacgaggaacacggcatccagttcgtggtggccgaaaaccgtcgcatcagc
caggatttcctggtcgcgccgggcgaatccggcggcgccaaggccgggcaggtggtgatg
ctggagatcatgcagcaaccgtccaagcacgcgcagccgataggacgcatcgtcgaggtg
ctgggcaactatgccgaccccggcatggagatcgagatcgccttgcgcaagcacgacctg
cccaacgaatttccgcatgatgccgaaaagcaggccaaggcgttctcgcccgaggttaaa
ccggccgactacgccggacgcgagagcgtggcccagttgccgctggtgaccatcgacggc
gagactgcgcgcgacttcgacgatgcggtatattgcgagccgaacgccaagggtttccgg
ctggtggtggccatcgctgacgtgagcgcctatgttaaatccggcgatgcgctggacaag
gaggcgatcaaccgcggcaattcggtgtatttcccgcgccgcgtcattccgatgctgcca
gaggagctatccaacggactgtgttcgctcaaccccaatgtcgaacgcctgtgcatggtt
tgcgacatgcagatcagcgcggatggcgagatacagaagcatcgcttctatccctcggtg
atgttctcgcatgcccgcctgacctacaccaaggtcgccgacatgctggaaaatccgcag
ggcgagaatgcgcgtgaatacgctgccgtattgccgcatatcaacaacctgtacaagttg
ttccagaccctgttgcaggcgcgcgaaaaacgcggtgccatcgatttcgagacggtcgag
acgcagatgatcttcaatgcgcagggcaagatcgagaagatcgtaccggtagtgcgcaac
gatgcgcataaactgatcgaggaatgcatgctggcggccaacgtgtgtgcggctgccttc
ctgaaagagcatgaccatccggtgctgtaccgcgtccacgaaggtcctacgccggagaaa
ctggaggcggtgcgcgaattcttcaaggaattcggcctgcaactgggcggtggcgacgat
ccgcaagccagcgattattccaagctgctcaagcagatcaaagggcggccggacgccgga
ctactgcaaaccgtgatgctgcgctccctgcgccaggcggtgtatgcgccggaaaacgtc
ggccacttcggcctgggctacgaggcatatgcacactttacctcgccgatccgtcgctat
ccggacttgctggtgcaccgcgccatcaaggccgtgctggagggcaaacaatacaagccg
aaactaaaatgggcggaactgggcgtgcattgctcgatgaccgaacgccgcgccgacgat
gccacgcgcgacgtggaggcctggctcaagtgtttctacatgcgcgaccatctgggcagc
gtgttcgacggcagcatttcctcggttaccggcttcggcctgttcgtggcgctggacgaa
ctctatgtcgaaggcctggtacacgtgtccgagctgggggcagactattaccatttcgac
cccgccaagcatcagatgctgggcgagcgcaccggcaagcgttaccgcttgggcgaccgc
gtgcgtgtgaaggtggtacgggtggatatggaaagcaccaagatcgacttcgtgctggag
accggtccggctgcttcaggttcggatgaggcttcgggcatccagggcatcgatgtcggc
gcctggggggcagcgtcgcccaagaaggccaaaataactgagaaatcgggcaagaccagc
aagtcgcctaaaacgggaaagtcgggtaaacgtcatggctga
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