Sideroxydans lithotrophicus: Slit_1758
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Entry
Slit_1758 CDS
T01196
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
slt
Sideroxydans lithotrophicus
Pathway
slt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Slit_1758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slt03019
]
Slit_1758
03009 Ribosome biogenesis [BR:
slt03009
]
Slit_1758
Enzymes [BR:
slt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Slit_1758
Messenger RNA biogenesis [BR:
slt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Slit_1758
Ribosome biogenesis [BR:
slt03009
]
Prokaryotic type
rRNA processing factors
Slit_1758
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2HC
Motif
Other DBs
NCBI-ProteinID:
ADE11989
UniProt:
D5CSQ3
LinkDB
All DBs
Position
1766276..1768783
Genome browser
AA seq
835 aa
AA seq
DB search
MKRMLFNATQPEELRVAIVDGQKLIDLDIETAGKEQRKSNIYKAVITRIEPSLEACFVEY
GGTRHGFLPFKEVSPQYYSAGAGNRPSIKEALKEGQELLVQVEKDERGNKGAALTTYISL
AGRYIVLMPNNPNGGGVSRRIEGEDRNELRDVLAQMEVPHGMSIIARTAGIGRNLDELQW
DLDYLKQLWDAIEGAAESEKAPSLIYLESSLVVRAIRDYFNPEIGEILIDTDDIYHQAQA
FMSTVMPDHVDRIKRYHDDVPLFSRFQIEHQIESAHARQVNLPSGGAIVIDHTEALTAID
INSARATRGGDIETTALNTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKNQREVENRL
RDALHFDRARIQTAKISRFGLLELSRQRLAPSLEESSYSTCPRCNGIGHIRGTESSALNI
LRIIQEEAMKDSSAAIHAQVPVDVATFLLNEKRADIHRIESRFKTAVILIPNPHMETPQY
NVTRLRQDDITADHLQASYKLVEKPEEVKPALASTAQEIKAQRPQAAVRGITPAQPAPKH
EVKTEKKTSLLGSLVGWLKSLGGESEPAKPAAPAKSGRGNQRRERGERSERGERGERGEG
GKQRRDRNEGGKQQRRDRNEAPRTDNKEQKEQPENRGERQQQQPRQPRPSSVDKPALEAP
KPVVAGEEGNGNREGRKRGRRGGRRERERREQQVAAPSGENAVVQTSGQSAAPATGEIAA
VPAPVQRTTPTEYVAYPDSMKKARPTEVVCYPAQSAPAPATVVAAPAAAPAPVAAPVDLG
SSGLTLIETDPNKAASIAPAQENRSQPPRRRQRPREIYTIENSEPLQQVETHSPN
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttattcaatgcgacgcagccggaagaactccgcgtcgccattgtggat
ggtcagaaactcatcgacctcgacattgaaaccgccggtaaagagcaacgcaagagcaac
atctacaaagccgtcatcacccgcatcgagcccagcctcgaagcctgcttcgtcgaatac
ggtggtacccgccacggattcctcccctttaaagaagtctctccgcagtattacagcgcc
ggcgccggcaatcgcccttccatcaaggaagcgctgaaagaaggccaggaactgctggtg
caagtggaaaaggacgaacgcggcaacaagggcgctgccctcaccacatatataagtctg
gccggccgttacatcgtgctgatgccgaacaaccccaacggtggcggtgtctcccgccgt
atcgaaggcgaagatcgcaacgaactgcgcgacgtgctggcccagatggaagtgccgcat
ggcatgagcatcatcgcccgcaccgcgggcatcggccgcaacctcgacgaattgcagtgg
gacctggactacctcaaacaactgtgggacgccatcgaaggcgccgcagaatccgagaag
gcgccttccctgatctatctggaaagcagcctggtggtgcgcgccatccgtgactacttc
aacccggagatcggcgagatcctgatcgacaccgacgacatctaccaccaggcgcaggcg
ttcatgagcacagtgatgccggaccatgtcgaccgcatcaagcgctaccacgacgacgtg
ccgctgttctcgcgtttccagatcgaacaccagatcgaatcggcacacgcacgccaggtg
aacctgccttccggcggcgccatcgtcatcgaccacaccgaagcgctgaccgccatcgac
atcaactccgcgcgcgccactcgcggcggcgacatcgagaccaccgcgctcaacaccaac
ctggaagcggctgacgagatcgcccgccagttgcgcctgcgcgacctgggcggcctcatc
gtcatcgacttcatcgacatggagtcgagcaagaaccagcgtgaagtggagaaccgcctg
cgcgacgccctgcacttcgaccgcgcccgcatccagactgccaagatctcgcgtttcggc
ctgctggaactgtcgcgccagcgtctggcccccagcctggaagaaagcagctacagcacc
tgcccacgctgcaacggcatcggccacatccgcggcaccgagtcttccgcactgaacatc
ctgcgcatcatccaggaagaagcgatgaaggacagcagcgccgccatccacgcacaagta
ccggtggacgtcgccaccttcctgctcaacgagaaacgcgccgacatccatcgcatcgaa
tcgcgcttcaagactgccgtcatcctcatccccaatccgcacatggagacgccgcaatac
aacgtcacccgcctgcgccaggacgacatcacggccgaccacctgcaagccagctataaa
ctggtggagaaaccggaagaggtcaagcctgcgctggcctccaccgcacaggagatcaag
gcacaacgtccgcaagcggccgtgcgcggcatcaccccggcacaacccgcgcccaagcat
gaagtgaagacagagaagaaaacctcgctgctcggcagcctggtcggctggctcaagtct
ctcggcggtgaaagcgaacccgcaaaacctgccgcaccggccaaaagcggccgcggcaac
cagcgccgcgaacgcggcgagcggagtgaacggggagagcgtggcgagcgtggcgaaggc
ggcaagcaacgccgcgaccgcaacgaaggcggcaagcaacagcgccgcgaccgcaacgaa
gctccgcgcaccgacaacaaggagcagaaagaacagccggaaaaccgcggcgagcgccaa
cagcagcaaccgcgccagccgcgtccatccagtgtggacaagccagcgctggaggcaccg
aagcccgtggtggcaggcgaagaaggcaacggcaatcgtgaaggccgcaagcgcggtcgc
cgcggtggccgtcgcgagcgcgagcgtcgcgaacagcaagtggcagcaccgtccggcgag
aacgcagttgttcaaaccagcggacagtccgccgcacctgcgaccggagaaattgccgcc
gttccagcgcctgtgcaacgcacaacgccgaccgaatacgtcgcctatcccgactcgatg
aagaaggccaggccgaccgaagtggtctgctatccggcacagtctgccccggcgccagca
accgtcgttgcagcgcctgccgctgcacctgctccggttgctgccccggtcgacctgggc
agcagcggcctgaccctgatcgagaccgatccgaacaaggcggcaagcatcgcaccggca
caggaaaatcgcagccagcccccgcgtcgtcgccagcgtccacgcgagatctacaccatc
gagaacagcgaaccgctgcagcaggtggagacgcattcgccgaactga
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