Sideroxydans lithotrophicus: Slit_1881
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Entry
Slit_1881 CDS
T01196
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
slt
Sideroxydans lithotrophicus
Pathway
slt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Slit_1881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slt03019
]
Slit_1881
03400 DNA repair and recombination proteins [BR:
slt03400
]
Slit_1881
Enzymes [BR:
slt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Slit_1881
Messenger RNA biogenesis [BR:
slt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Slit_1881
DNA repair and recombination proteins [BR:
slt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Slit_1881
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
Peripla_BP_4
Motif
Other DBs
NCBI-ProteinID:
ADE12110
UniProt:
D5CT24
LinkDB
All DBs
Position
complement(1915162..1917006)
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AA seq
614 aa
AA seq
DB search
MTTGTAQQILRDTFGYASFRGAQQAIVEHVVAGGDALVLMPTGGGKSLCYQIPALMRKGV
GIIVSPLIALMQDQVDALKQLGVSAAFLNSSLEAEEAREVSRQLMRCELKLLYVAPERLL
TEGFLNLLERLNQDNNIALFAIDEAHCVSQWGHDFRPEYRGLTVLHERFPSVPRIALTAT
ADAPTRSEVVERLSLEQAEQFVSSFDRPNIRYRVTLKDNARKQLQDFLETEHPDDAGIVY
CLSRKKVEETAAWLKEQGWDALPYHAGLDAAVRSKNQKKFLREEGVIMVATVAFGMGIDK
PNVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGDVVSMRQMLLSGDAPEERK
RVELQKLDALLGFCESTACRHQTILRYFGEEHPGDCNECDNCLSPVDTWDATKAAQMALS
CIYRTGQRFGVVHLIDVLLGKTTPKVEQFNHQQLSTFGIGKELAQQQWSSVYRQLVAAGF
INVDIEGYGGLQLAEAARPVLRGEQEVWLRRDAEPAKRKSSMAERGSRLREAFAGANDDP
LWLALKAKRTELAREQGVPPYVIFHDSTLLEILNRKPQTLDEMGRISGVGQAKLAKYGDA
FLLVVEDATNNGRG
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccggcaccgcccaacagatcctgcgcgacaccttcggctatgcctctttcaga
ggggcgcagcaggctatcgtcgagcatgtggtcgcgggcggcgatgcactggtactgatg
ccaacgggcggcggcaagtccctgtgttaccagatccccgcactgatgcgcaaaggtgtc
ggcatcatcgtgtcgccgttgatcgcgctaatgcaggatcaggtcgatgcgctaaaacag
cttggtgtatcggccgctttcctcaattccagcctggaggccgaagaggcccgcgaagtc
tcgcggcaactgatgcgctgcgaattgaaactgttgtacgtcgcgccggaacgactgctg
accgagggtttcctgaacctgctggagcgccttaatcaggacaacaacatcgccctgttc
gccattgacgaagcgcactgcgtctcgcaatggggacacgactttcgtcccgagtaccgc
gggttgaccgtattgcacgagcgctttccgagcgtgccgcgcatcgcgctcaccgccact
gcggatgcgcccacgcgcagcgaggtcgtcgagcgcctgtcattggagcaggcagagcaa
ttcgtttccagcttcgaccgccccaacatccgctatcgcgtcacactcaaggataacgcg
cgcaaacagttgcaggacttcctcgaaacagagcaccccgacgatgcgggcatcgtgtat
tgcctgtcgcgcaagaaggtcgaagagactgccgcctggttgaaggaacagggctgggat
gccttgccgtatcacgccggactggatgccgcggtgcgcagcaagaaccagaaaaaattc
ctgcgcgaggagggcgtgatcatggtcgccaccgtcgccttcggcatgggcatcgacaag
cccaacgtgcgcttcgtcgcccacctcgacctgcccaaaagcatggaaggctactatcag
gaaactggccgggccggccgtgacggcctgcccgcgaatgcctggatggcgtacggcctc
ggcgatgtagtctccatgcgccagatgctgctgtccggtgacgcaccggaagagcgcaag
cgcgtcgaactgcagaagctcgatgcgctgctcggcttctgcgaatccaccgcctgccgc
caccagaccatcctgcgctacttcggcgaagaacatcccggtgactgcaatgaatgcgac
aactgcctgtcgcccgtggatacctgggatgccaccaaggccgcgcagatggcactgtcc
tgcatctaccgcaccgggcaacgtttcggcgtcgtgcacctcatcgacgtgttgctgggc
aagacgacacccaaggtcgagcagttcaaccaccagcaactcagcaccttcggcatcggc
aaggaactagcgcaacagcaatggagcagcgtctatcgccagcttgtcgccgccggattc
atcaatgtggacatcgaaggctatggcggactgcagctggccgaagccgctcgccccgtg
ctacgcggtgagcaggaggtctggctgcgccgcgatgccgagccagccaaacgcaagagc
agcatggccgaacgcggttcgcgcttgcgcgaggccttcgccggggccaacgacgatccc
ttatggcttgccctcaaggccaaacgtaccgaactcgcgcgcgagcagggcgtgccgccc
tatgtcatcttccacgacagcaccctgctggagatactcaaccgcaaaccgcagacgctg
gacgaaatggggcggatcagcggtgtgggacaggctaaactggcgaagtatggcgatgca
ttcttgctggtagtggaggatgcaacgaacaatgggagaggttag
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