Sideroxydans lithotrophicus: Slit_2243
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Entry
Slit_2243 CDS
T01196
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
slt
Sideroxydans lithotrophicus
Pathway
slt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Slit_2243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slt03019
]
Slit_2243
Enzymes [BR:
slt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Slit_2243
Messenger RNA biogenesis [BR:
slt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Slit_2243
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
P-loop_SecA
Utp25_C
AAA_22
PVL_ORF50
Motif
Other DBs
NCBI-ProteinID:
ADE12471
UniProt:
D5CLM6
LinkDB
All DBs
Position
complement(2277517..2278869)
Genome browser
AA seq
450 aa
AA seq
DB search
MNTVSFVDLKLAPPILKALTEAGYVTPTPIQAQAIPLALEGHDLMAGAQTGTGKTAAFAL
PMLQKLLPHASASTSPAKHPVRALILVPTRELAVQVEESVKAYAKHTNLRSLVVYGGVDI
KTQTPHLKTGVEILVATPGRLLDHIEQKTVLLNQVQMLVLDEADRMLDMGFMPALKRILA
LLPRQRQSLMFSATFSNEIKKLSEDFMNYPTLIEVARSNASAENITQKVYLVEQSGKHQL
LAQLLRGDDAKQVIVFTKTKLTASRLAKQLQREGVSADAIHGDKSQLERMQALDAFKQGR
VAVLIATDVAARGLDIDSLPMVINYEIPHAAEDYVHRIGRTGRAGASGTAISLVSPEEEK
YLLEIEKLIKKEIQKERVDMPAPDARPHRAEPRERNREYHAPAPKKPSHDPWFDKPYVPN
ISAEAPVKKPEPVVNKPKAQIPALFVRRTN
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
ttgaacacagttagttttgtcgatctgaagctggccccgccaatcctcaaggcactcacc
gaagccggttacgtcacccccaccccgatccaggcgcaagccatcccgctggcgctggag
gggcacgacctgatggcgggtgcgcagaccggtacgggcaagaccgcggcctttgccttg
cccatgctgcaaaagctgttgccgcatgccagcgccagcacttcgccggcaaagcatccg
gtgcgggcgctgattctggtgccgacgcgggaactggcggtgcaggtggaagagagcgtc
aaggcttatgccaaacacacgaacctgcgttcgctggtggtgtacggtggtgtggatatc
aagacgcagactccgcacctgaagaccggcgtggagatactggtggcgacgccgggccgc
ttgctggaccatatcgaacagaaaacggtgctgttgaaccaggtgcagatgttggtgctg
gacgaggccgaccgcatgctggacatgggcttcatgccggcgctgaaacgcattctggcc
ttgttgcccaggcagcggcaaagcctgatgttctccgcgacattctcgaacgagatcaag
aaactctccgaggatttcatgaactacccgacgctgatcgaggtcgcgcgcagcaacgcg
tcggccgagaacatcacgcagaaggtctacctggtcgaacagtccggcaagcatcagctg
ctggcacaactgctgcgcggcgacgacgcgaaacaggtcatcgtgttcacaaagaccaaa
ttgaccgccagccggctggccaaacagctgcagcgcgaaggtgtttcggccgatgccatc
cacggcgacaagagccagctggaacgtatgcaggcgctggatgcgttcaagcagggcagg
gtcgccgtgctgatcgccaccgatgtggcagcgcgtggactggacatcgacagcctgccg
atggtcatcaactacgagataccgcatgccgcggaggattatgtgcaccgcatcggtcgc
accggccgggccggggcttcgggtacggcgatctcgctggtgtcgccggaagaagagaaa
tatctgctggagatcgagaagctgatcaagaaggagatccagaaagaacgggtggatatg
cccgcacccgacgcccggccgcatcgcgccgaacctcgtgaacgcaaccgcgaataccac
gctcccgcaccgaagaaaccaagtcacgatccctggttcgacaaaccttatgtgccgaac
atcagtgcggaagcgccggtcaagaagcctgagccggtagtgaacaaacccaaagcgcaa
atccccgcgctgttcgtgcgccgcaccaactga
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