Sideroxydans lithotrophicus: Slit_2362
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Entry
Slit_2362 CDS
T01196
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
slt
Sideroxydans lithotrophicus
Pathway
slt03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
slt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Slit_2362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slt03400
]
Slit_2362
Enzymes [BR:
slt01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Slit_2362
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Slit_2362
DNA repair and recombination proteins [BR:
slt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Slit_2362
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ADE12589
UniProt:
D5CLZ4
LinkDB
All DBs
Position
2389431..2390246
Genome browser
AA seq
271 aa
AA seq
DB search
MPELPEVETTLRGIAPHLKQRRIVDVVIRNPDLRWPIPGNLPELLRGHIVQDLQRRAKYL
LISFGHGTLILHLGMSGSLRIQPLDTSAEKHDHFDLVMDNGQLLRLRDPRRFGAVLWHQG
DVAQHPLLASLGPEPLLAGFDADTLYAATRKRKAAIKLVIMDNHVVVGVGNIYANEALFR
AGIRPQLAAGKISKERCARLTVTIKEVLRAAIRKGGSSLRDYVDSNGKQGYFQQHYFAYG
RTGEPCRVCATPIRQIRQGQRSTFYCPRCQK
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattaccggaggtcgaaaccaccctgcgcggcatcgcgccgcatctcaagcaa
cggcgcatcgttgatgtcgtcatccgcaatcccgacctgcgctggcccatccccggaaat
ctgcccgagctattgcgcggccacatcgtgcaggatctgcagcgtcgcgcaaagtatctg
ctcatctcattcggtcacggcactctcatcctgcaccttggcatgagcggcagcttgcgt
atccagccactcgacacctccgcagagaaacacgaccacttcgatctggtcatggataac
ggccaattgctgcgtttgcgcgatcctcgccgtttcggtgcagtgttgtggcaccagggc
gatgtcgcgcaacacccgctgctggcatcgctcggtcccgaaccgctgctggcagggttc
gatgccgacacgctttatgcagccacaaggaagcgcaaagcggcgatcaagctggtcatc
atggacaatcatgtggtggtcggcgtgggcaacatctacgccaacgaagcgctgttccgc
gccgggatcaggccgcaactggccgcaggcaagatcagcaaggaacgctgtgcgcgtttg
accgtgaccatcaaggaggtgctgcgagcggcgatcaggaagggcggcagcagcttgcgc
gactacgtggatagcaacggcaagcaaggctacttccagcagcattatttcgcttatgga
cggacaggagaaccctgccgcgtatgcgcaacacccatcaggcagatacgccagggacag
cgctcgactttctattgcccccgctgccagaagtga
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