Sideroxydans lithotrophicus: Slit_2444
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Entry
Slit_2444 CDS
T01196
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
slt
Sideroxydans lithotrophicus
Pathway
slt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
slt00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Slit_2444
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slt03021
]
Slit_2444
Transcription machinery [BR:
slt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Slit_2444
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
SPO22
CENP-B_dimeris
YGL117W
TMEM120A-B
Motif
Other DBs
NCBI-ProteinID:
ADE12669
UniProt:
D5CMJ7
LinkDB
All DBs
Position
complement(2470861..2472825)
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AA seq
654 aa
AA seq
DB search
MATPQQKKKSTPPAKTAAASAKQTAKEKAVAAAASVDPSQEIEARRTRLKALILLGKERG
YLTFAEINDHLPDMLEVEQVEGVVSMINDMGITVCDVAPDTESLVMNETAPPVADEDAAE
EAEAAISTVDSEFGRTTDPVRMYMREMGVVNLLTRQDEIEIAKRIEDGLKHMIQAISACP
ATIAEILALADKVAKEELRIDELIDGFIDTQDEAMVSEVAEEEETEEEEEEDEEEESEED
GEAAAAANLAQLKEDALVRFALISDLFTKLGKAYEKYGYRSKQYDKLQQQISDELMQFRF
SAKQVDALCETMRGLVEEVRSCERSIQELCVTKAHMPRTHFIKVFPLNEGNLEWVKHEMA
SKKAYSETLSRYEAAIVDQQKKMLALQQRVGIPILDLKEINKQMTNGEAKARRAKRDMIE
ANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITR
SIADQARTIRIPVHMIETINKMNRISRQILQETGMEADAATLAIKMEMPEDKIRKILKIA
KEPISMETPVGDDDDSHLGDFIEDANSLAPIEAAVYDSLRNVTKDILDSLTPREAKVLRM
RFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEKLKSFLDGES
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggcgactccgcagcaaaagaaaaagtccactccccctgccaaaacagccgcagccagc
gctaaacagacagccaaagaaaaggctgtcgccgctgccgcttcggtcgatccctcgcaa
gagatcgaggcacgccgcacgcgcctgaaagcgctgatcctgctgggcaaggaacgaggc
tacctgacctttgccgagatcaacgaccatctgccggacatgctcgaagtcgagcaggtc
gaaggcgtggtcagcatgatcaacgacatgggtatcaccgtgtgcgacgtggcgccggat
accgaatcgctggtgatgaacgagaccgcacctccggtcgccgacgaggatgcggcggaa
gaagccgaagccgccatctccaccgtggattccgaattcggccgcaccaccgacccggtg
cgcatgtacatgcgcgagatgggcgtggtcaatctgctcacccgccaggatgagatcgag
atcgccaagcgcatcgaggacggcctcaagcatatgatccaggcgatctccgcctgcccg
gccaccatcgccgagatcctcgcgctggccgacaaggtcgccaaggaagaattgcgcatc
gacgaactgatcgacggcttcatcgacacgcaggatgaagcgatggtcagcgaagtcgcc
gaagaagaagagaccgaggaagaagaagaggaagacgaagaagaggagtcggaagaggac
ggcgaagccgccgctgccgccaacctggcacagctcaaggaagatgcgctggtacgcttc
gccctcatcagcgaccttttcaccaaactgggcaaggcctacgagaaatacggctaccgc
agcaaacaatacgacaagctgcagcagcagatctccgacgagctgatgcagttccgcttc
tcggccaagcaagtggacgccctgtgcgagaccatgcgcgggctggtggaagaagtgcgc
agctgcgagcgcagcatccaggaactctgtgtgaccaaggcgcacatgccgcgcacgcac
ttcatcaaggtgttcccgctcaacgaaggcaacctggaatgggtcaagcacgagatggca
tccaagaaagcgtacagcgaaacgctgtcgcgctacgaggcagccatcgtcgaccagcag
aagaagatgctggcgctgcaacagcgcgtgggcatccccatcctcgacctgaaagagatc
aacaagcagatgaccaacggcgaagccaaggcacgccgcgccaagcgcgacatgatcgag
gccaacctgcgcctggtgatctccatcgccaagaaatacaccaaccgcggcctgcagttc
ctcgacctcatccaggaaggcaacatcggcctgatgaaggccgtggacaagttcgaatac
cgccgtggctacaagttctcgacctacgccacatggtggatccgccaagccatcacgcgt
tccatcgccgaccaggcgcgcaccatccgtatcccggtgcacatgatcgagaccatcaac
aagatgaaccgcatctcgcgccagatcctgcaggagaccggcatggaagccgacgccgcc
accctggcgatcaagatggagatgccggaagacaagatccgcaagatcctcaagatcgcc
aaggaacccatctccatggagaccccggtgggcgacgacgacgattcgcacctgggcgac
ttcatcgaagacgccaattcgctggcccccatcgaggccgcggtctacgacagcctgcgc
aacgtcaccaaggacatcctggacagcctcaccccgcgtgaagccaaggtgttgcgcatg
cgcttcggtatcgagatgaacaccgaccacacgctggaggaagtcggcaaacagttcgac
gttacccgcgagcgcatccgccagatcgaagccaaggccctgcgtaaactgcgtcatcct
tcgcgttcggaaaagctcaagagcttcctcgacggcgaaagttaa
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