Sideroxydans lithotrophicus: Slit_2567
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Entry
Slit_2567 CDS
T01196
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
slt
Sideroxydans lithotrophicus
Pathway
slt03030
DNA replication
slt03430
Mismatch repair
slt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
slt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Slit_2567
03430 Mismatch repair
Slit_2567
03440 Homologous recombination
Slit_2567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slt03032
]
Slit_2567
03400 DNA repair and recombination proteins [BR:
slt03400
]
Slit_2567
Enzymes [BR:
slt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Slit_2567
DNA replication proteins [BR:
slt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Slit_2567
DNA repair and recombination proteins [BR:
slt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Slit_2567
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ADE12792
UniProt:
D5CN95
LinkDB
All DBs
Position
complement(2605605..2609174)
Genome browser
AA seq
1189 aa
AA seq
DB search
MQPSFVHLRLHSEYSIADGIVRIGEAVSAAKADAMPALALTDLSNVFGLVKFYKEARGAG
IKPIVGCDVYVSNDAVRDQPFRLLLLCQSHAGYLRLCGLLTRAYLENQYRGRPEIRTEWL
RDGTDGLIALSGAHLGEVGMTLLNGNASSAEVVALGYADLFPQRFYLEVQRFGAAREEQH
LRDTVKLASKLALPVVATHPVQFLTIDDFKAHEARVCIAEGYVLNDKRRQRQFTAQQYFK
TQAEMAALFADLPEALQNSVEIAKRCNISLKLGKPHLPDFPTPNGESLDDFLRSESQRGL
EQRMLQLYPDETVRAAKMAEYQARLDFEVNTIINMKFPGYFLIVADFIRWAKSFRDARFP
NGVPVGPGRGSGAGSLVAYSLGITDLDPLRYELLFERFLNPERVSMPDFDVDFCQDGREL
VIQYVRHHYGEACVSQIATFGTMASKGVIRDVGRVLDFPYGLCDRLSKLVPVEGVKPVSL
RKAREMEPEFNAVIASEEGVEELMELGERLEDLTRNVGMHAGGVLIAPGKLTDFCPLYCA
EGSESTVSQYDKDDVEAVGLVKFDFLGLRTLTIIDWAVRYIQDLGTGISDLGSSNAGAGG
DAKSQIQNPKSFSIENIPLDDKATYDRIFRTANTTAVFQFESRGMKDTLVKAQPDCIDDL
IALNALYRPGPMDFIPDYINRKHKREQVILPHPLLEKVVGNTYGIMVYQEQVMQSAQVVA
GYTLGGADMLRRAMGKKKAEEMAEQRSIFVAGAAKNGIEEKKANEIFDTMEKFAGYGFNK
SHAAAYSLVAYQTAYLKCHYPAAFMASTMTSEMVNTDKVSFFYQDAVQQGLKILAPDINS
SCFRFQPVDEKTIAYGLGAVKGTGEAAVENIVAARAAGPFRDLFDFCHRVDKRIVNRRAI
EALIRAGAFDSISDHRYQLLASLDAALGSAEQKARAANQNSLFGDDEAHAMPVQMADVPR
WKMREQLAQEKTALGFYLSGHPYQEFAAELSNFVKHRLADITPDIVTPAGGNSGYGGGRR
NNAKSIVLAGMVSGVRVLQTRRGKMAVVTLDDGSAALEVVVFSELFDSNRTWIRDDELLV
VSGKAELDAYSGSMRVTADELYDFASARAAYAKRLDICCSIDDKVRVPQLAELLKPYCGG
QCPVQINYRNLIGSVPLSLGEAWQVTLPDELLEGLRAMCGERNVRVIYA
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccctccttcgtccaccttcgtctgcatagcgaatattccatcgccgacggcatc
gtgcgcatcggcgaagcggtcagcgcggccaaggcggatgccatgccggcgttggcgctc
accgacctgtccaatgtgttcggactggtcaagttctacaaggaggcgcgcggggccggc
atcaagcccattgtcggttgcgacgtgtatgtcagcaacgatgccgtgcgcgaccagcct
ttccgcctgctgctgttgtgccaatcccacgcgggttatctgcgcctgtgcggtctgctg
acgcgggcctatctggagaaccagtaccgcggccggcccgagatccgcacagaatggctg
cgcgacggcacggatggcctgatcgccttgtccggtgcacatctcggcgaggtgggcatg
acattgctgaacggcaatgcgagcagtgccgaagtcgtggcgctgggatacgccgacctg
ttcccgcaacgtttttatcttgaagtgcagcgcttcggcgcagcgcgcgaggaacagcat
ctgcgcgatacggtaaagctggcgtcgaaactggcgttgccggtggtcgccacacatccg
gtgcagttcctgacgatcgacgatttcaaggcgcacgaagcgcgggtctgcattgcagag
ggctatgtactcaacgacaaacgcaggcagcgccagttcactgcgcagcaatatttcaag
acgcaggccgagatggcggcactgttcgccgatctgccggaagcgctgcagaacagcgtg
gagatcgccaagcgctgcaatatctcgctgaagctgggcaagccgcacctgccggatttc
cccacccccaacggagaatcgctggacgatttcctgcgcagcgaatcgcagcgcggcctc
gaacagcgcatgctgcagctctatccggacgaaacggtgcgcgcagcgaagatggcggaa
tatcaggcgcggctggatttcgaggtcaacaccatcatcaacatgaagttccccggctac
ttcctgatcgtggccgacttcatccgctgggcgaaatccttccgcgatgcgagattcccc
aacggcgtgccggtgggaccggggcgcggttccggcgccggttcgctggtggcgtattcg
ctcggcatcaccgacctcgatccgctgcgctacgaactgctgttcgagcgtttcctcaat
cccgaacgcgtctccatgcccgacttcgacgtcgacttttgccaggacgggcgcgaactg
gtgatccagtacgtgcggcatcattacggcgaggcgtgtgtgtcgcagatcgccaccttc
ggcaccatggcgtccaagggcgtgatccgcgacgtcggccgcgtgctggatttcccatac
ggtctgtgcgacaggctttccaagctggtgccggtggaaggcgtgaagccggtgtcgctg
aggaaggcgcgcgagatggagccggaattcaatgccgtcatcgccagcgaagaaggcgtg
gaagagctgatggagctgggcgaacggctggaggatctgacgcgcaacgtcggcatgcat
gcgggcggcgtgttgatcgcaccgggcaagctgaccgacttttgcccgctgtattgcgcc
gaaggcagcgagagcacggtgagccagtacgacaaggatgacgtggaagcggtcggtctg
gtcaagttcgacttccttggtctgcgcacgctgaccatcatcgattgggcggtgcggtac
attcaggatttaggaactgggatttcggatttaggtagtagcaacgccggagctggcggg
gatgctaaatcccaaatccaaaatcccaaatccttctcgatagagaacatcccgctcgac
gacaaggcgacctacgacaggatattcaggaccgccaataccaccgcagtgttccagttc
gaatcgcgcggcatgaaggacacgctggtcaaggcgcagcccgattgcatcgacgacctg
atcgcgctgaatgcgctttaccgaccgggtccgatggatttcattcccgattacatcaac
cgcaagcacaagcgcgagcaggtgatcctgccgcatcctttgctggagaaagtggtcggc
aatacctacggcatcatggtgtaccaggagcaggtgatgcagtcggcgcaggtggtggcc
gggtacacgctgggcggcgccgacatgctgcgccgcgcgatgggcaagaagaaggccgag
gagatggcggagcagcgcagtatcttcgtggccggagcggcgaagaacggcatcgaggag
aagaaggcgaacgagatcttcgacacgatggagaagttcgcgggatacggtttcaacaag
tcgcacgcggcggcttactcgctggtcgcatatcagaccgcgtatctgaagtgccactat
cctgccgcgttcatggcttcgaccatgacctcggaaatggtcaacaccgacaaagtcagt
ttcttctatcaggatgccgtgcagcagggcttgaaaatactggcgccggatatcaactcc
tcgtgcttccgtttccagccagtggacgaaaagaccatcgcctacggcctcggtgcggtg
aagggtaccggcgaagcggcggtggagaacatcgtggcggcgcgtgctgcggggccgttc
agggatctgttcgatttctgccatcgtgtggacaaacgcatcgtcaaccgtcgcgctatc
gaggcgctgatccgcgccggtgcattcgacagcatcagcgatcatcgctatcaattgctg
gcgtcgctggatgccgccctcggcagcgccgagcagaaggcgcgcgcagccaaccagaac
agcctgttcggcgatgacgaagcccatgccatgccggtacagatggcggacgtgccgcgc
tggaagatgcgcgagcagctggcgcaggaaaagaccgcgctgggtttttacctgagcggg
catccgtaccaggaattcgctgccgagttgtcgaacttcgtcaaacacagattggccgat
atcacaccggatatcgtcacgccagcaggcggcaacagcggctacggcggcgggcgccgc
aacaatgcgaaatcgatcgtgctcgcggggatggtcagtggcgtgcgcgtgctgcagacg
cggcgcggcaagatggcggtggtgacgctggacgatggcagcgccgcgctggaagtggtg
gtgttcagcgaactgttcgacagcaaccgcacctggatacgcgacgacgagttgttggtg
gtgagcggcaaggcggaactggatgcctactcgggcagcatgcgcgttaccgcggatgag
ctttacgacttcgcctcggcacgtgccgcgtacgccaagcggctggacatctgctgctcc
atagacgacaaggtgcgcgtgccgcaactggcggagctgctcaagccctattgcggcggg
cagtgcccggtgcagatcaattaccgcaacctgatcggcagcgttccgctgtctcttggc
gaggcgtggcaagtcacgctgccggacgaactgctggaaggattgcgagccatgtgcggg
gagcggaacgtgcgggtcatctacgcataa
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