Sideroxydans lithotrophicus: Slit_2844
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Entry
Slit_2844 CDS
T01196
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
slt
Sideroxydans lithotrophicus
Pathway
slt03420
Nucleotide excision repair
slt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Slit_2844
03430 Mismatch repair
Slit_2844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slt03400
]
Slit_2844
Enzymes [BR:
slt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Slit_2844
DNA repair and recombination proteins [BR:
slt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Slit_2844
MMR (mismatch excision repair)
Other MMR factors
Slit_2844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
PcrA_UvrD_tudor
AAA_12
Motif
Other DBs
NCBI-ProteinID:
ADE13069
UniProt:
D5CPS4
LinkDB
All DBs
Position
complement(2858768..2860936)
Genome browser
AA seq
722 aa
AA seq
DB search
MNSSLLSGLNPEQRAAVELPARSALILAGAGSGKTRVLTTRIAWLISTGQVSPHGILAVT
FTNKAAKEMVTRLSAMLPINTRGMWIGTFHGLCNRMLRAHHREANLPQTFQILDSGDQLS
AIKRLMKAMNVDDEKYPPREMQNFISGSKEQGLRAHEVEAYDPYTRRKVEVFAEYDAQCQ
REGVVDFSELLLRCYELLSRNQPLREHYQERFKHILVDEFQDTNPLQYRWLKLLAGQNNA
LFAVGDDDQSIYAFRGANVGNMQELLRDFQVENVIKLEQNYRSHGNILDAANALIQNNRN
RLGKNLWTDADKGEQIRVYEAGTDVDEAAFLVEEIRQLNREGVRLSEMALLYRSNAQSRV
LEHALVSAGLSYRVYGGLRFFERQEIKHALAYLRLMENTDDDNALLRIINFPTRGIGARS
IEQLQEAAKQYNTTLWDAAARAGGKVTAFVGIIESLRSGTQNLPLPEIIEHVLQHSGLAD
HYKNETGAKKREAEERLENLNELITAATMFVHENEDDSLTAFLTHASLEAGEHQAGDSED
ALHLMTVHAAKGLEFHTVFITGLEESLFPHQNSIDNGDLDEERRLMYVAITRARRRLYLT
FAQSRMLHGQTHYGMASSFLRELPEELLHWITPRVSARKTFHTSSFETNSYVNAFAATPA
LEKAPPAPSSVWRIGQRVFHQKFGEGVVTDSEGGGNEGRVQVNFKRAGSKWLALEYAKLT
AI
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgaattcatccctgctttccggtctcaatcccgaacaacgtgccgccgtcgaacttcct
gcccgatccgcgctgatcctggccggcgcgggcagcggcaagacgcgcgtattgaccacg
cgcatcgcctggctcatcagcactgggcaggtttcgccgcacggtatcctcgcggtgacc
ttcaccaacaaagcggccaaggagatggtcacgcgcctctccgccatgctgccaatcaac
acgcgcggcatgtggataggcaccttccacggcttgtgcaaccgcatgctgcgcgcgcat
caccgcgaggccaacctgccgcagaccttccagatcctcgattccggtgaccagctttcc
gccatcaagcgcctgatgaaggcgatgaacgtcgacgatgagaagtatccaccgcgcgag
atgcagaatttcatcagtggcagcaaggagcagggcttgcgcgcgcacgaggtggaagcc
tacgatccctacacgcggcgcaaggtcgaggtgttcgctgagtacgacgcgcaatgccag
cgcgaaggcgtggtggatttttccgaactgctgctgcgctgctacgagctgctgtcgcgc
aaccaaccgttgcgcgagcattaccaggagcgtttcaagcacatcctggtggacgagttc
caggacaccaacccgctgcaatatcgctggctaaagttgttggccgggcagaacaatgcc
ttgttcgccgtgggtgacgacgaccagtcgatctacgccttccgcggcgccaacgtcggc
aacatgcaggagctgctgcgcgactttcaagtcgagaacgtgatcaagctggaacagaac
taccgctcgcacggcaacattctcgatgccgccaacgcgctcattcaaaacaaccgcaac
cgcctcggcaagaacctgtggaccgatgccgacaaaggcgaacagatccgcgtgtatgag
gccgggaccgacgtggatgaggccgccttcctcgtcgaggagatccggcaactcaatcgc
gaaggtgtgcgcttgtcggagatggcgctgttgtaccgctccaacgcacagtcgcgcgtg
ctggagcatgcgctggtgtcggcgggcttgtcatatcgcgtctatggcggcctgcgcttc
ttcgagcggcaggagatcaagcacgcgctggcctacctgcggctgatggagaacaccgac
gacgacaatgctctattgcgcatcatcaacttccccacccgcggcatcggcgcgcgcagc
atcgagcagttgcaggaagcggccaagcaatacaacaccacactgtgggatgcagcggcg
cgggcgggcggcaaggtcaccgccttcgtcggcatcatcgaatcgctgcgcagtggcacg
cagaacctgccgctgccggagatcatcgagcatgtgctgcagcacagcgggctggcggat
cactacaagaacgagaccggtgccaagaaacgcgaagcagaagaacggctggagaacctg
aacgaactgatcaccgcggcgaccatgttcgtgcacgagaacgaggatgacagcctcact
gccttcctcacccatgcctcgctggaagcgggcgagcaccaggccggcgacagcgaggac
gcgctgcacctgatgacggtgcatgccgcgaaaggcctggagttccacaccgtgttcatc
accgggctggaggaaagcctgttcccgcaccagaacagcatcgacaacggcgacctcgac
gaagaacgtcgcctgatgtacgtggcgatcacccgtgcgcgccgccgcctctacctcacc
ttcgcgcagagtcgcatgctgcacgggcagacgcactatggcatggcatcgagttttctg
cgcgagttgcccgaagagctgctgcactggatcacgccgcgggtgagcgcgcgcaagacc
ttccataccagcagtttcgagaccaacagctatgtcaacgcgttcgccgcgactccggcg
ttggaaaaagcgccgcccgcgcccagttcggtgtggcgcatcggccagcgcgtgttccac
cagaaattcggcgagggcgtggtaacggacagcgaaggcggcggcaacgaaggtcgcgtg
caggtcaacttcaaacgcgcgggcagcaaatggctcgcactcgaatatgccaagcttacc
gccatctga
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