Streptococcus lutetiensis: KE3_0008
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Entry
KE3_0008 CDS
T02775
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
slu
Streptococcus lutetiensis
Pathway
slu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
slu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KE3_0008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slu03400
]
KE3_0008
Enzymes [BR:
slu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KE3_0008
DNA repair and recombination proteins [BR:
slu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KE3_0008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_22
AAA_16
RecG_dom3_C
adh_short
Motif
Other DBs
NCBI-ProteinID:
AGS04606
UniProt:
A0AB33AJA3
LinkDB
All DBs
Position
5830..9339
Genome browser
AA seq
1169 aa
AA seq
DB search
MGKSMNIIDLFSQNKLIQSWHAGVSNLGRQLIMGLSGASRALAIASAYQANEEKIVIITS
TQNEVEKLVSDLSSLIGEDKVYTFFADDVAAAEFIFASMDKAHSRLEALNFLQDKNQSGI
LITSLVGARVLLPSPKTYSESQLNFLVGDLYNLDKIVKILSNVGYQKVSQVLNPGEFSRR
GDIVDIYEITADYPYRLEFFGDEVDGIRQFDAQTQKSLSNVEQVTIYPADELILSEEDFA
RASQAFEKYLETAKDDQQAYLSELYAATQEQYRHQDIRRFLSLFYAKEWTLLDYIPKGTP
VFFDDFQKLVDRNTKFDLEVANLLTEDLQRGKAVSILVYFADIYKKLRQYQPATFFSNFH
KGLGNLKFDKLHNFTQYPMQEFFNQFPLLIDEINRYQKSKATILVQSDTQHGVERLQENL
QEYGLDLPIVGANDLQEHQAQLVVGDLSNGFYFADDKIVLITEHEIYHKKVKRRIRRSNI
SNAERLKDYNELSKGDYVVHHVHGIGQFLGIETIEIHGVHRDYLTIQYQGSSTISLPVEQ
IESLSKYVSADGKEPKINKLNDGRFQKTKQKVSKQVEDIADDLLKLYAERNQLKGFAFSP
DDELQKEFDEDFAYVETEDQLRSIKEIKHDMEEEKPMDRLLVGDVGFGKTEVAMRAAFKA
VKDHKQVAVLVPTTVLAQQHFTNFSERFENYPVAVDVLSRFQSKKEQAATLEKLKKGQVD
IIIGTHRLLSKDVEFADLGLIIIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHM
SMLGIRDLSVIETPPTNRYPVQTYVLETNPGLIREAIIREIDRGGQVFYVYNRVDTIDQK
VSELQELVPEASIGFVHGQMSEIQLENTLMDFIEGVYDVLVATTIIETGVDISNVNTLFI
ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKILNEVSEKRLDAIKGFTELGSGFKI
AMRDLSIRGAGNILGASQSGFIDSVGFEMYSQLLEEAIAKKQGKSQARRKSNAEINLQID
AYLPSEYIDDERQKIEIYKRIREIDSLKDYQSLQDELIDRFGEYPDQVAYLLEIGLVKSY
MDNAFTELVERKDNNLLVRFEKASLQHYLTQDYFEALSKTDLKARIGENQGRIDIIFNVR
GKKDYEILEELQKFGSMLAKIKARKTKED
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatctatgaatattattgatttatttagccaaaataagctaatccaaagttgg
catgcaggcgtgtctaatcttggtagacagcttattatgggcttgtcaggagcaagtaga
gctcttgctatagcttcagcttatcaagctaatgaagaaaaaatagtgattatcacatca
actcaaaatgaagttgaaaaattggttagtgatttatctagtttgattggtgaggataag
gtttatacgttttttgcggatgatgttgctgctgcagaattcatttttgcttcgatggat
aaagctcattctcgcttagaagctttgaattttttacaagataaaaatcaatcaggtatc
ttgattacgagtttagttggtgctcgtgtcttgttgccaagtcctaaaacttattcagaa
agtcaattgaattttcttgtcggagatctttacaaccttgacaagattgtaaagatcttg
tcaaatgtcggttatcaaaaagtttctcaggttttgaatccaggcgagtttagccgacgt
ggtgatattgtcgatatctatgagattacagcagattatccgtaccgcttggagttcttt
ggtgatgaagttgatggtattcgtcaatttgatgcacagactcaaaaatctcttagcaat
gttgaacaagtaacgatttatccagcggatgagttgattttgtcagaagaggattttgct
agagctagtcaagcttttgagaagtatcttgagactgcaaaggacgaccaacaagcttat
ttgagtgaactgtatgcagcaacacaagagcagtatagacatcaagatattagacgtttt
ttgtctcttttttatgctaaagagtggacacttctcgattatattccaaaagggacacca
gtcttctttgatgattttcaaaagctggttgatcgcaacactaagtttgatttagaggtt
gctaatctattgacagaagatttacagcgtggtaaagctgtgtcaatattggtttacttc
gctgatatttataaaaaattacgtcagtaccagccagcgaccttcttttcaaactttcat
aaaggcttgggaaatctgaaatttgataaattacacaatttcactcaatacccaatgcaa
gaatttttcaatcaatttccgttgctgattgatgaaattaatcgttatcaaaaatcaaaa
gctactattttagttcaatcagatacgcagcatggggtagaacgtctgcaagagaacctg
caagaatatggtttggatttaccgatagttggtgcaaatgatttacaagaacatcaagcg
caattagtagttggcgatttatcaaatggtttttactttgctgacgataaaattgtttta
atcactgagcacgaaatttatcataaaaaagtcaaacgtcgcatccgtcgttcaaatatc
agcaatgcagaacgtttgaaagattacaatgagctttctaaaggtgattatgtggttcac
catgttcatggaattggtcaatttttagggattgaaaccattgaaattcatggggtacat
cgtgactatttaacgattcaataccaagggtcttcaacgatttctcttcctgtagaacaa
attgaaagtttatcaaaatatgtttctgcagatggtaaagaacccaaaatcaataaatta
aatgatgggcgtttccaaaagaccaaacaaaaagtttctaaacaagttgaagacattgct
gatgatttgttgaaactatatgcggaacgcaatcaattgaaaggttttgccttctcacca
gatgatgagttacaaaaagagtttgatgaagactttgcttacgtagagacagaagaccaa
cttcgttctataaaagaaatcaaacacgatatggaagaagaaaagccaatggatcgcctt
ttggtcggtgatgttggttttggtaaaacagaggttgccatgcgcgcagcctttaaggct
gtaaaagaccacaaacaagtagccgtcttggtaccgactactgttcttgctcaacagcac
ttcacaaatttctcagagcgttttgagaattatcctgtagcggttgatgtgcttagtcgt
ttccaaagtaaaaaagagcaggcagccactttggaaaaattgaaaaaaggtcaagttgat
attattatcggaactcaccgattgttatcaaaagatgtagagtttgcagatttgggcttg
attattatcgatgaagagcaacgttttggcgttaaacacaaggaaaaattaaaagagctt
aagactaaagttgatgttttaaccttaacagcaactccaattcctcgtacacttcacatg
tctatgcttggtatccgtgatttatctgtgattgaaacaccaccgacaaatcgttaccct
gttcagacttatgtcttggaaactaatccaggtctaattcgtgaggcgattattcgtgaa
attgatcgtggtggtcaagttttctacgtttacaatcgcgttgacacgattgatcaaaag
gtttctgagttacaagaattggtgcctgaagcaagtattggatttgttcatggtcaaatg
agtgaaattcagcttgaaaataccttgatggactttatcgaaggtgtttacgatgttctc
gttgccacaacgattattgagacgggtgttgatatttctaatgtcaatacacttttcatt
gaaaatgctgatcacatgggcttgtcaaccttgtatcaacttcgtggtcgtgttggtcgt
tcaaatcgtattgcttatgcttatctcatgtatcgtccagataagattttgaacgaagtc
tctgagaaacgtttggatgccatcaaaggatttacagagcttggttctgggttcaaaatt
gctatgcgtgacttatccattcgtggtgcgggaaatattttgggtgcctcacagagcggc
tttattgattctgtcggttttgagatgtattctcaattattagaagaagcgattgctaag
aaacaaggtaaatcccaagcacgtcgtaagagtaatgctgaaattaacctccaaatcgat
gcttatcttccaagcgagtacattgatgatgaacgtcaaaaaatcgagatttacaaacgt
atccgtgaaattgatagtcttaaagattaccaaagtttacaagatgaattgattgaccgt
tttggagaatacccagatcaggtagcttaccttcttgagattggtcttgtgaaatcctac
atggacaatgcctttacagaacttgttgaacgtaaagataataatcttttggtgcgtttt
gaaaaagcttcgctacaacattatttgactcaagattattttgaggctctttctaagaca
gatttgaaagctcgaatcggtgagaatcaaggtagaattgacattatctttaatgtcaga
ggtaaaaaggactatgaaattttagaagaactccaaaaatttggtagcatgctagctaag
attaaagcaagaaaaactaaagaagattaa
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integrated database retrieval system
