Streptomyces luteireticuli: AB8735_27425
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Entry
AB8735_27425 CDS
T11183
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
slua Streptomyces luteireticuli
Pathway
slua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB8735_27425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slua03019
]
AB8735_27425
Messenger RNA biogenesis [BR:
slua03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB8735_27425
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF7697
DUF1161
Motif
Other DBs
NCBI-ProteinID:
XEZ42889
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Position
6077021..6078706
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AA seq
561 aa
AA seq
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MSHPHPELGPPPKLPKGGLRVTPLGGLGEIGRNMTVFEYDGRLLIVDCGVLFPEEEQPGV
DLILPDFSSIRDRLDDIEGIVLTHGHEDHIGGVPYLLRERPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVVEGQHESVGPFDCEFVAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDRRLTDLPAFARLGEEGIDLLLVDSTNAEVPGFVPPERDISNVLRTVFAGAQKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLRVPAGLVVDVKALDDLPD
EEVVLVCTGSQGEPMAALSRMANRDHQIRIVAGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNARVHVSGHASAGELLYFYNICKPKNLMPVHGEWRHLRANAELGALTGIPKD
HIVIAEDGVAVDLVDGRARIVGKVQAGYVYVDGLSVGDVTESSLKDRRILGEEGIISVYV
VVDSTTGKVVSGPQIQARGSGIDDASFAAVVPKIEEAIARAAADGVAEPHQLQQLVRRAV
GRWVSDQYRRRPMILPVVIEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagccacccgcaccctgaactcggtcccccgccgaagctccccaagggcggcctgcgc
gtcaccccgctcggcggcctcggcgagatcggccggaacatgacggtcttcgagtacgac
ggccgtctgctgatcgtcgactgcggagtgctcttccccgaggaggagcagcccggagtt
gatctgatcctgccggacttcagctccatcagggaccgcctcgacgacatcgagggcatc
gtcctcacgcacggccacgaggaccacatcggcggtgtcccgtacctgctgcgcgagcgg
ccggacatcccgctgatcggctccaagctgaccctcgccctgatcgaggccaagctccag
gagcaccgcatccgcccgtacaccctcgaggtcgtggagggtcagcacgagagcgtcggc
cccttcgactgcgagttcgtggcggtcaaccactccatcccggacgccctggccgtcgcc
atccgcaccccggccggcatggtcgtgcacaccggcgacttcaagatggaccagctcccg
ctggaccgccgcctcaccgacctgcccgccttcgcgcggctcggcgaggagggcatcgat
ctgctgctggtggactccaccaacgccgaggtccccggcttcgtcccgccggagcgcgac
atctccaatgtgctgcggacggtcttcgccggtgcccagaagcggatcatcgtggcgagc
ttcgccagccacgtccaccgcatccagcagatcctggacgccgcccacgagtacggccgc
cgggtcgccttcgtcggccgctccatggtccgcaacatgggcatcgcccgtgacctgggc
tatctgcgggttccggccggtctcgtcgtcgacgtcaaggcgctcgacgacctgccggac
gaagaggtcgtgctggtctgcaccggctcccagggcgagccgatggcggcgctgtcccgg
atggccaaccgcgaccaccagatccggatcgtcgcgggcgacaccgtgatcctggcctcg
tccctcatcccgggcaacgagaacgcggtctaccgcgtgatcaacggcctgacccggtgg
ggcgccaacgtcgtccacaagggcaacgcgcgtgtccacgtctcgggccacgcctccgcc
ggcgagctgctgtacttctacaacatctgcaagccgaagaacctcatgccggtgcacggc
gaatggcgccacctgcgggccaacgccgagctcggtgcgctgaccggtatccccaaggac
cacatcgtcatcgccgaggacggcgtggcggtggacctggtggacggtcgcgcccggatc
gtcggcaaggtccaggccggttacgtctacgtggacggcctgtccgtcggcgacgtcacc
gagtcctcgctcaaggaccggcgcatcctcggcgaggaaggcatcatctcggtctatgtg
gtcgtggacagcacgaccggcaaggtcgtcagcggcccgcagatccaggcccgcggttcc
ggcatcgacgacgcgtcgttcgccgcggtcgtgcccaagatcgaggaggccatcgccagg
gccgccgccgacggtgtcgccgagccgcaccagctccagcagctggtccggcgtgcggtg
ggccgctgggtctccgaccagtaccgccgtcgtccgatgatcctgcccgtggtcatcgag
gtctga
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