Sander lucioperca (pikeperch): 116034265
Help
Entry
116034265 CDS
T07345
Symbol
smarca5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116034265 (smarca5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sluc03021
]
116034265 (smarca5)
03036 Chromosome and associated proteins [BR:
sluc03036
]
116034265 (smarca5)
Transcription machinery [BR:
sluc03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
116034265 (smarca5)
Chromosome and associated proteins [BR:
sluc03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
116034265 (smarca5)
RSF complex
116034265 (smarca5)
WICH complex
116034265 (smarca5)
B-WICH complex
116034265 (smarca5)
NORC complex
116034265 (smarca5)
BRF complex
116034265 (smarca5)
NuRF complex (fruit fly)
116034265 (smarca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
Myb_DNA-binding
DBINO
AAA_14
Motif
Other DBs
NCBI-GeneID:
116034265
NCBI-ProteinID:
XP_031132708
Ensembl:
ENSSLUG00000007075
LinkDB
All DBs
Position
4:33347871..33357116
Genome browser
AA seq
1033 aa
AA seq
DB search
MSELLSCVEQREEQTQLEEAGGAEEKSDSSDAGKESSSDAGPDGQDASSSSSKKVPAPGY
EEKVQTDRTNRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKNDEKQNLLSAGD
NRHRRTEQEEDEELLSESTKTTNVCTRFDDSPSYVKSGKMRDYQVRGLNWLISLYENGIN
GILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRAVCL
IGDREERNALIRDVLLPGEWDVCVTSYEMLIIEKAVFKKFNWRYLVIDEAHRIKNEKSKL
SEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTNNCLGDTKL
VERLHTVLRPFLLRRIKADVEKTLLPKKEIKMYVGLSKMQREWYTKILMKDIDILNSAGK
MDKMRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDLHLVVNSGKMVVLDKLLPKMKDQGS
RVLIFSQMTRVLDILEDYCMWRNYGYCRLDGQTPHEERQVSINAYNEPNSSKFIFMLSTR
AGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQQKQVRVFRFITENTVEERIVER
AEMKLRLDSIVIQQGRLVDPSANKLGKDEMLSIIRHGATHVFASKESEITDDDIDAILER
GERKTMEMKEKLSSLGESTLRNFTMDTENSSVYTFEGEDYREKKKVITNWIEPPKRERKA
NYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIGYKV
PRNPDMPNSAQLQKEEQGKIDEAEALAEEELEEKENLLQQGFTIWNKRDFNQFIKANEKW
GRDDIENIAREVEGKTPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKA
LDSKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESVYDELRQCIRNS
PQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEREKAEKKKRGPKSGSAQKRKSEA
TPDGRGRRKKLKL
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaactcctgagctgcgtggaacagcgcgaagagcagactcaacttgaagaagcc
ggaggagcagaggagaagtcagattcttcagatgctggaaaagagtcatcttcagatgct
gggcccgatggacaagatgcctcctcctcgtcatccaagaaagtacctgctccgggctac
gaggagaaagtgcaaacagaccggaccaacagatttgagtacctgttgaagcaaacagag
ttgtttgctcatttcatccaaccagccgcacagaagacccccacctccccgctgaagatg
aagccagggcgtcctcgcatcaagaatgatgagaaacagaacctgctctctgccggagac
aaccgacatcgccgcacagagcaagaggaggacgaagagcttctaagcgagagcaccaag
acgactaatgtctgcacacgctttgatgactctccctcctatgtcaagtcaggaaaaatg
agagactatcaggtccgtggtctgaactggctcatctctttgtacgagaatggcatcaac
ggcatcctcgctgacgaaatgggtttggggaagactctgcagactatttccctgctgggt
tatatgaagcactacagaaacatccctggtccccacatggtgctggtgcccaagtccacc
ctctacaactggatgaatgagttcaagagatgggtgccttcgctccgtgcagtctgcctg
atcggagacagagaggagagaaatgccctgatcagagatgtgctgttgcctggagaatgg
gatgtgtgtgtcacatcctacgagatgctcatcattgaaaaggcagtgttcaagaagttc
aactggaggtacctggtcattgacgaagcccacagaatcaagaatgagaaatcaaagcta
tcagagatcgtgcgagaatttaagaccaccaatcgtttgttgctgactggaacacccctc
caaaacaaccttcacgagctgtgggctctgctgaacttcctgctacctgatgtcttcaac
tcagcagacgactttgattcctggttcgacacaaacaactgcttgggtgatacaaagttg
gttgaacgtcttcacactgttctgcgtcccttcttgcttcgtcgtataaaagctgacgta
gagaagactctgcttccgaaaaaagagatcaagatgtatgtgggtctgagtaagatgcag
cgagagtggtacacaaagatcctgatgaaggacattgacatactgaactcggcgggtaag
atggacaagatgcgtctgctgaacgttctcatgcagctgaggaaatgctgcaaccacccg
tacctgttcgacggggccgagccgggtcccccatacacgactgacctccacctggtggtg
aacagtggcaagatggtggtgctggacaagctgctacccaagatgaaggatcagggttct
cgtgtgctcatcttcagtcagatgaccagggtgctggacatcttggaggactactgcatg
tggaggaactatggctactgccgcctggatggccagacgccgcacgaggagagacaggtc
tctatcaacgcatacaatgagcccaacagctctaagttcatcttcatgttgagcaccaga
gctggaggactgggtatcaacctggctacagcggatgtggtcatcctgtacgactcggac
tggaacccccaagtcgatcttcaggccatggaccgagctcacaggattggtcaacagaag
caggtacgcgtctttcgtttcatcaccgaaaacacagtggaggagaggattgtggagagg
gccgagatgaaactgcgcctggactccattgtgatccagcaaggaagacttgtggatcca
agcgcaaacaagctgggcaaggatgagatgctgtccatcatccgccacggtgccacacat
gtgtttgcctccaaagagagtgagatcacagatgatgacattgatgcaatcctggagaga
ggtgaaagaaagaccatggagatgaaggagaagctgtcttcactgggtgagagtactctg
agaaacttcaccatggacacagagaacagcagtgtgtacacattcgaaggagaagattat
agagagaagaaaaaggtcattaccaactggatcgagccacccaagagagaaaggaaagcc
aattacgctgtggatgcttacttcagagaggctctgcgagtcagtgagcccaaagcaccc
aaggctcctcgtccccccaagcagccaaatgtgcaggacttccagttcttccctccacgt
ctttttgagcttctagaaaaggaaattctgttctacagaaagaccataggctacaaggtt
ccccgtaatccagacatgccaaattcagctcagctccagaaagaagagcagggtaaaatc
gatgaggctgaggctctcgcagaggaggaactggaggagaaggagaacctgctgcaacag
ggatttactatttggaacaaacgtgacttcaaccagttcatcaaagccaacgagaagtgg
ggaagagatgatattgagaacattgccagagaagttgagggaaaaactccagaggaggtc
atggaatattctgctgtattctgggagcgctgtaatgagctgcaggacatcgagaagatt
atggcccagatagagagaggagaggccaggatccagagaaggattagcatcaagaaagca
ctggactcaaagattggtcgctacaaggctcccttccatcagctccgtatctcctatggc
accaacaaaggcaagaactacacagaggaggaggaccgcttccttatctgtatgctccac
aagctgggcttcgacaaggagagcgtgtatgacgagctgcgtcagtgcatacgcaactct
cctcagttccgctttgactggttcctcaaatccaggactgccatggagcttcagaggcga
tgcaacaccctgattacactgatagagagagagaacatggagctggaggagagggagaag
gctgagaagaagaaacgaggcccaaagagtggctcagcccagaaacggaagtcagaggca
accccagatggtcgtggacgcaggaaaaagctcaagttgtga
DBGET
integrated database retrieval system
