Sander lucioperca (pikeperch): 116034479
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Entry
116034479 CDS
T07345
Symbol
vsx1
Name
(RefSeq) visual system homeobox 1 isoform X1
KO
K09335
visual system homeobox protein 1
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sluc03000
]
116034479 (vsx1)
Transcription factors [BR:
sluc03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain Paired-related
116034479 (vsx1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
116034479
NCBI-ProteinID:
XP_031133024
Ensembl:
ENSSLUG00000007956
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Position
15:33479755..33487589
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AA seq
362 aa
AA seq
DB search
MNMTELSEEKPKVKMLSPGFGIDKSRMHGSGFRSKGFAITDLLGLESELQARGPPGPGPG
VSSPGVSPSAEHHPGPGGLGGFSFPGSSLPLGLGFLCSLAAQQPAFLPGHLPLLHRADTH
YLQTVHEAQRQAADNYSDEECLSDRNDSKTSQNSQKRKKRRHRTVFTSHQLEELEKAFHE
AHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVMAEYGLYGAMVRHS
IPLPESILNSAKNGMMGSCAPWLLGEPHTRMHKKSLEISKKCPSPRESDSTHCDSFCDAS
ERRGEALEPPCEAREEEEEEEEEEAIDLSSSSKQQQEDAAGGSVRPASSPRRQSAGESDE
RS
NT seq
1089 nt
NT seq
+upstream
nt +downstream
nt
atgaacatgacggaactcagcgaagagaagcccaaagtgaagatgttatccccggggttt
gggatcgataagtcccgcatgcacggctccgggttccggtccaaaggcttcgccatcacg
gacctgctgggcctggagtcggagctgcaggcccggggcccaccgggaccaggaccgggc
gtctcctccccgggggtctccccctctgcggagcaccatccgggccccggcggcctcggg
ggcttctccttcccgggaagctctctcccgctcggcctcggcttcctgtgcagcctggcg
gcgcagcagcccgccttcctgccgggacacctgccgctgctgcaccgcgccgacacgcac
tacctgcagaccgtgcacgaggcccagaggcaggcggctgacaactactcagatgaagaa
tgtctctctgacagaaacgactccaaaacctcccaaaactcccagaagagaaagaagagg
agacacaggacggtgtttacgtcccaccagctggaggaactggagaaagcgttccacgag
gctcattatcctgacgtttacgctcgagagatgctcgccatgaagacggagctgcctgag
gacagaatacaggtgtggttccagaaccggcgagcgaagtggcgtaagcgtgagaagtgc
tggggccgcagcagcgtgatggcggagtacggcctgtacggcgccatggtcagacactcc
atcccgctgcccgagtccatcctcaactcagccaagaacggcatgatgggatcctgtgcc
ccatggctgctcggtgagccgcatacacgaatgcacaagaagtctctggaaatttccaaa
aagtgtcccagccctcgggagtcggactcgactcactgcgactcattctgcgatgcttcg
gagcgccgtggcgaggcgttggagccgccctgcgaagccagggaggaagaagaagaggaa
gaggaagaagaggcaatcgacctatccagttcctccaaacagcagcaggaagacgccgcc
ggaggctccgtaagacccgcctcctcgccgcggcggcagagcgccggcgaatcagacgaa
cgcagctga
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