Sander lucioperca (pikeperch): 116034829
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Entry
116034829 CDS
T07345
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sluc03021
]
116034829 (taf1c)
Transcription machinery [BR:
sluc03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
116034829 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Beta-prop_WDR36-Utp21_1st
Motif
Other DBs
NCBI-GeneID:
116034829
NCBI-ProteinID:
XP_031133436
Ensembl:
ENSSLUG00000011563
UniProt:
A0A8C9YHR0
LinkDB
All DBs
Position
14:28819036..28834260
Genome browser
AA seq
1074 aa
AA seq
DB search
MDYQFPQQLFPSFYNCAPPDSVLKHCAGNWGCYDRVRPQGTSGPLSSWTFTSRHQVRGET
WRHTEPIPIPLLSPKKSFLWPSTPPDPLDFTKHMQNFFMDHCLDAFGCMSEILSENFNFK
QGQRERYRRDSVHMWKVKNVLDMLKYKICAQSYSSRSLDTYSALLSDVVPSIPPELLGSL
LYEELTEQRDRMLFSEGATGGALAFVPYSQSGSSSQRGCLLYPGNRGLDCLNFHRVELQH
HKGSSSCVDVSSSDPFSFQLKGPIRQISSASLLNDCCVAVRSDHLCGVWRFSERNEPRLL
QVVNTREVATCINVSPHVLGEVLVASESGAANLWTVGRGMQKIREEDSNLYFNAKSSWRW
CEFSAHPRVMLYADRTGVELTDIRLSPVSNHTLFRISNTPECRSGERLILSRYLGDGHPF
QHLITTQFSAYIMDERFPCVPMLKWDHMMQSPPMFCHAVRGSTSGSAVSGAKTTKVLLGS
HNSQEITLLQYSGGRAEACSTHGPPQALLRPRDSLKHLPVQIPHRLDIATSRLSSPVAGL
TCIQKRGGREAGGEECICILQLTEAGDIFYQILEPEQPEQPDTCRPPAADDDLLPQPTLK
EATTLGREPAKPLQPHSEMVVSDTSSDEGVIGPTQGPTVQRFVAETPEREQRVLNSYSSS
EDSDSGGKGQNLKQLGLQVIVNDDPELDQVCGLEVGVKDGKVGKGTADNTEEPSSLGHVG
PSEWQTPVKLSDGALITWKRWLQKLMHKSRDNKPRPRCLQHFTVKTGGLLHLSEDERDEA
QRYSTKAKPVQSLRRDLRACMSKRSLLVHSAVSASLGAPDVVMLPDLVDTEVWRDQISQR
LTLSWQGEEAWRAWWEDQLGLNREEKVEALKRKRRREKEAKRATGRRLELSGSFTSSVSY
QSELADFSDSTGWSSAASQGAWSDTESKVSQLEGSLECGTPRASTPSTMQTDTPAYTPTA
TPQSVKDKQGDQQTPSSSHTLALSQTPDSTLANQRSNKRPAEDYLSSLFAPQDEPSQLRS
SQSVPQRSLRMDLSQDTAVWSGFSQSQSLSQSSQGRMGLSQASQPKKKKSRMGF
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atggattaccagttcccacagcagctttttccttcgttttacaactgcgcaccgccggac
tcggtcctgaaacactgcgctggaaactggggctgctacgaccgagtcagacctcagggc
acctctggtcctctctccagctggacattcacatccaggcatcaggtcagaggggagacg
tggcgtcacactgagccgataccaattcccctcctgtctcctaaaaagtctttcctttgg
ccttctacgcccccagatccgctggacttcacaaaacatatgcagaacttcttcatggac
cactgcctggatgccttcgggtgcatgagtgaaattctgagcgaaaatttcaactttaaa
caaggacagagagagagatatcgcagggattcagtccacatgtggaaggtgaaaaatgtc
cttgacatgctgaagtataaaatatgcgctcagtcctattcctccagatctctggacacg
tacagcgccctgctgtcggacgtggtgccctccatccctcctgagctgctgggttctctg
ctgtacgaggagctgacagagcagagagaccgcatgctgttctctgaaggagccacaggg
ggcgctctggcttttgtcccctattcacagagcggcagcagctctcagcgtggctgtctc
ctctaccctggaaaccggggattggactgcctcaacttccatagagtggagctgcagcac
cacaaaggaagttcttcctgtgtggacgtcagcagcagtgacccgttcagcttccagctg
aaaggccctatcagacagatcagctccgcctccctgttaaacgactgttgtgttgcagtg
cggtcggatcacctgtgcggagtttggaggttcagcgaaagaaatgaacctcgtctgctg
caagttgtcaacaccagagaggtcgcaacctgcatcaacgtcagtcctcatgttttaggt
gaagttctagtggcaagtgaaagcggagcagcaaacctgtggactgttggcagagggatg
cagaagattcgggaagaagacagtaacctgtacttcaacgctaagtcgtcatggcgatgg
tgtgagttctccgcccacccaagggtgatgctgtacgcagacaggacgggggtagagctc
acagacattaggttgagtcctgtctcgaatcacactctgtttcgcatcagcaacacccca
gagtgtcgcagtggggagagacttattctgtccagatatctgggagatggccatcccttc
cagcacctcatcacgactcagttctcagcctacatcatggacgagcgttttccctgcgtg
cccatgctcaagtgggatcacatgatgcagtccccacccatgttttgtcatgctgttcgt
ggctccacctctggctcagcagtgagtggggctaagaccactaaggtcctgctggggtcc
cacaactctcaggaaatcacactgctgcagtactcgggaggcagagcagaggcctgttcc
acccacggtcctcctcaggcactgctcagacccagagacagtctgaaacaccttcctgtc
cagatccctcaccgcctggacatcgctaccagcagattgtcctcacctgttgcaggtcta
acttgtattcagaagagaggtggaagagaggccggtggcgaggagtgtatctgtatccta
cagctgacggaggcgggagatattttctaccagatcctcgagcctgagcagcctgagcag
cctgacacctgtcgacctccagcagcagatgatgatctgctgccacaaccaactctaaaa
gaagccacaactttagggagagaaccagccaaaccgcttcaaccacattctgagatggtt
gtatcagacacatcgagcgatgagggtgtaatcggaccaactcagggtccaactgtgcag
aggtttgtggctgaaacaccagagagggaacaacgagtgctgaactcttactcttcctct
gaggattcagactctggagggaaaggtcaaaacctgaagcagttggggctgcaggtcatc
gtcaacgatgatccagagctggatcaagtgtgtggattggaagtaggtgtgaaagatgga
aaggtgggtaaaggtacagctgataatactgaggaacccagcagtttgggtcacgttggt
ccctctgagtggcagactccagtaaagctcagtgacggcgctctcatcacgtggaaacgt
tggctccagaaattgatgcataagagtcgtgataacaagccccgtccacgctgcctacag
cacttcacagtcaaaactggaggcctcctccacctatctgaagatgagagagatgaggcg
cagagatattcgacaaaagctaagcctgtacagagcttgaggcgtgatctgagagcgtgc
atgtccaaacgctcgctgctggttcacagtgctgtctctgcctctctcggggctccagat
gtggtaatgttgccagacctggtggatacagaagtctggagagatcagatcagccaacgt
ctgaccctctcttggcagggggaggaggcgtggcgggcgtggtgggaggatcagctgggg
ctgaacagggaggagaaggtggaggctctgaagaggaaaaggaggagggagaaggaggcg
aagagagccaccggccgacgcctggagctgtccgggagcttcacctcgtctgtcagctac
cagtcagagctggctgatttttctgattcaacgggttggtcctctgcagcgagccagggg
gcgtggtcagacacggaaagtaaggtgtcccagttggagggctctttggagtgcgggacg
ccaagggcctcaacaccttccaccatgcaaactgacactccagcttacacaccgaccgcc
acacctcaaagtgttaaagataaacaaggtgaccagcagactcccagcagctcccacacc
cttgccctgtctcagacacctgactccacactggccaatcagaggagcaacaaacgtcca
gctgaggactacctcagctctctgtttgcaccacaggatgagccctcgcagctccgtagc
tcccagtctgtccctcagaggagcctcaggatggatctgtcccaggacaccgccgtctgg
tcaggtttctctcagtctcagtccctctcccagagttcacagggtcggatggggctgtcg
caggcgtcacagcccaagaagaagaagtctcggatgggattttga
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