KEGG   Sander lucioperca (pikeperch): 116035528
Entry
116035528         CDS       T07345                                 
Symbol
rae1
Name
(RefSeq) mRNA export factor isoform X1
  KO
K14298  mRNA export factor
Organism
sluc  Sander lucioperca (pikeperch)
Pathway
sluc03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:sluc00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    116035528 (rae1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sluc03019]
    116035528 (rae1)
   03036 Chromosome and associated proteins [BR:sluc03036]
    116035528 (rae1)
Messenger RNA biogenesis [BR:sluc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     116035528 (rae1)
Chromosome and associated proteins [BR:sluc03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    116035528 (rae1)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_EML_2 Beta-prop_WDR3_1st WDR55 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd EIF3I Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_Aladin WD40_RFWD3 Beta-prop_ACSF4 ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_IFT140_1st Beta-prop_SPT8 NBCH_WD40 ExoI_SH3 Beta-prop_Nup120_160 Beta-prop_WDR41
Other DBs
NCBI-GeneID: 116035528
NCBI-ProteinID: XP_031134503
Ensembl: ENSSLUG00000019370
LinkDB
Position
6:complement(39349544..39357890)
AA seq 369 aa
MSLFGTTSGFGAGGTGVFGNATTDSHNPMKDVEVTSPPDDSISCLAFSPPTMPGNFLIGG
SWANDVRCWEVQDNGQTVPKAQQMHTGPVLDACWSDDGSKVFTASCDKTAKMWDLNSNQA
LQIAQHDGPIKSIHWIKAPNYSCIMTGSWDKTLKFWDTRSPNPMMSLQMPERCYCADVVY
PMAVVATAERGLIVYQLENQPSEFRRIDSPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
AIHYINPPNPAKDNFTFKCHRSNGTNTTTPQDIYAVNAISFHPVHGTLSTVGSDGRFSFW
DKDARTKLKTSEQLDQPITACCFNHNGNIFAYASSYDWSKGHEYYNPQKKNYIFLRNAAE
ELKPRNKKW
NT seq 1110 nt   +upstreamnt  +downstreamnt
atgagtttatttgggacaacctccggatttggagcaggagggaccggtgtctttggaaac
gcaacaacagacagccataatcccatgaaggatgttgaagtgacttcgcctccagatgac
agcatcagctgtctggctttcagtccccccaccatgccaggaaacttcctcattggagga
tcctgggccaacgatgtccggtgctgggaggttcaggacaatgggcagactgtccccaaa
gcccaacagatgcacacaggtccagtgctggatgcatgctggagcgatgatgggagtaaa
gtcttcactgcttcttgcgataaaacagccaagatgtgggatcttaacagcaatcaagca
ttgcagattgcacagcatgacggtccgatcaaatcaatccactggataaaagccccgaac
tacagctgcataatgactggcagttgggacaaaacactgaagttctgggacactcgctct
cccaatcccatgatgtctctgcagatgccagagagatgctattgtgcagatgttgtgtac
cccatggcagtggttgccacagctgagagaggcctaatagtgtaccagctggagaaccag
ccctctgaatttcggagaatagactctcctctcaaacatcagcaccgctgtgttgccata
ttcaaggacaagcagaacaagcccactggctttgcactgggaagcatcgaaggccgagtg
gccatccactatatcaaccctccaaacccagccaaagacaacttcacctttaagtgccac
aggtcgaatggaaccaacacgaccactccacaggacatctatgctgtgaatgccatctcc
ttccatcctgtccatggcacactgtctactgtgggctcagatgggcgcttcagcttctgg
gacaaagacgcccgcaccaagttgaagacctcggagcagctcgaccagcccattacggct
tgctgcttcaaccacaatggcaacatctttgcgtatgcttccagttacgactggtcgaag
ggtcatgagtactacaacccccagaaaaagaactacatcttcctaaggaatgctgccgag
gagctgaagcctcggaacaagaaatggtga

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