Sander lucioperca (pikeperch): 116036312
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Entry
116036312 CDS
T07345
Symbol
tdrd12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12 isoform X1
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sluc03036
]
116036312 (tdrd12)
Enzymes [BR:
sluc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
116036312 (tdrd12)
Chromosome and associated proteins [BR:
sluc03036
]
Eukaryotic type
Gene silencing
piRNA pathway
116036312 (tdrd12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
CS
Helicase_C
Motif
Other DBs
NCBI-GeneID:
116036312
NCBI-ProteinID:
XP_031135674
LinkDB
All DBs
Position
7:complement(34293338..34322487)
Genome browser
AA seq
1464 aa
AA seq
DB search
MLKISNLKIESPSCLWGRVVRGPVGDAETTDQYDKLLTRMNLFYHDVTQDLRKLKPATLE
EGQVYVVYWSVRKSWCRAVVESIFMDSLYCHVRCLLVDHGERLVIPSDQIRIAMEPFLQL
PFWVRKFHLAGIKPKTLRVSVFEKAPALIPSTQWDSSATLYLHKLLQVSTQTEAVLLESE
SDSTSIELYLTVRNVKICVNDDLVAKKFAYYSRESADSNGLDEVDTHPVMLSYSILTQTV
GTTSKKPTAQTQLSPVMSQNLTAAEAVDWLTAPSTPQSQQHQLKTFEEGSRSTLTDGHLS
PGSQSKNGPDAAAAAVVERDSSEDTDSSLAAALSKNLSLFRFLKFLNPYSSYQQAAPCVS
QHEVLKDCRPEETTAASATCTGQEVLIPSNNSEPETPDNQALLSMSGAEGLCESSLVKYQ
TDEETSSFSRSGESGPAEKTWRSEEDWVCSRLLEWLNPKPLNFDPDAAEDDTVVASDPRR
SGILVHSVLPVEPCTSLDDGPITEALRWVLRRKQYTTLSPADCYSWPAVARGCNAVIVAQ
NADQPLSYIAPLLSHILLNSIFTCLTSTSGPIAVLLCPGWEKAQAVYDLLEEIKATKVLH
PAILLLGVGKDEAKDVRIPKNCLLLVTTPFSFVRLLSCHCFLFLRLYHLVLDEADQLFSL
APDQMATILQHFQKVTTSEEKASCPQQLVAVAKRWNSHMEGLLANHMPCPCIVMTVPEEA
ALYGNVQQIILMTLESSKVSVLLGALDFNPVVGQKTLIVANSAQEVEDVFKAVSNKSAFC
LKTHEGLTHEFDFVIQQWRKDIGPSTHVILVTNNECLKCLGIRDATCVVHYGFPTSPKVF
GERLFCMAENFRNLSERGSSQDQAGSPHPSRSVLLISERNAGHVVGILRYLGRTNAPLPP
ELLSFAQGVHAARENQKTNKPFCSYLKSFGVCRDSSVCPDRHRYISQLDQSGLPASGVIE
VVPIYIKTASVFYGRIVQKEDGGFQSMASEMTSYYANKKPGVHEVLEGGLYAVQEDEVFH
RVKILSVPDRGGRLFFSVFARFIDVGKEEEVKSHQILQLPEQFHSLPGQAVEIIVCRVKP
VDAETDWHPKVTRALSQKIRGLQHRARAVFSLGNTVFVDPMVRVTKVPGMKTVINEYNVQ
SEILNTGMGVSNPEHLDLLKALCQESKEAGHVNGSGNGPASLEDRIKAEEEVLAEAFRAA
EANRLAELPHLADIPPLEPCEPLSPVFPVIRSLVPEPPVPRAPKLHLVPVCVQKILSAGQ
TAIELRNAHTVDLKSAEQIMRIGDGGELCPMTSQAACLKPKENGVNGGDHESNIQQVIGT
KERDCDDSTKSFHPQARWYQTSDSAIVTVKLINPESQRCDFYPDRVVYSGRANGRTYRAD
LQLHGNIAADRCSWEMKSNEPVLKLVKQQPGNWERLLRSKNIFVSYDMDHFVEDEDKTPN
GLCFVENTGNDNWYVNSETDSDSD
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaaatatcaaatttgaagattgagagcccgtcctgcctctggggtcgggttgtt
cgggggcccgtcggtgacgcagagaccacagaccagtacgacaaactgctgactcggatg
aacctcttctaccacgacgtcactcaggacctgcgcaagctgaagcccgcaacgttagag
gagggacaggtgtatgtggtgtactggtcagtgaggaagtcgtggtgtcgggccgtggtg
gagtcgatctttatggattcgttgtactgtcatgttcgctgcctcctggtcgaccacgga
gaacgactcgtcatcccctcggaccagatacgaatcgctatggagcccttcctccagctg
cctttctgggtgagaaagttccacctggcgggcatcaaaccaaaaaccctgcgagtgtct
gtctttgagaaggcgccagcgctcattccgtccactcaatgggacagctctgctacgctc
tacctgcacaaactgctgcaagtgtcgacgcagacagaggccgtgttgcttgaatccgag
tcggactccacatccattgagctgtacctgaccgtaaggaacgtcaagatctgtgtgaac
gacgatctggtggccaaaaagtttgcgtactatagcagagagtcagctgacagcaacggc
ctggacgaggtggacacacatcctgtcatgttgtcctacagcatcttaacccagactgtc
ggcacaacgtcaaagaaaccgacagcacagacccaactatctcctgtgatgtcacaaaat
ctgactgcagccgaagctgttgattggctgacggctccctctacacctcagagccaacaa
catcagctgaagaccttcgaggaaggcagcaggtcaacgctcacagacggacatctgtct
ccaggcagccagtcaaagaacggcccagacgctgctgctgctgctgttgtagagcgtgat
tcgtcggaggatacagactcgtctctggctgcagctctgagcaaaaatctcagtttgttc
aggttcctgaagtttctgaatccttacagcagctaccagcaggcggctccatgtgtcagt
cagcatgaagtgctaaaagactgccgacctgaagaaacgactgcagcctccgccacctgc
acaggacaggaagtattaatcccttcaaacaacagtgagcctgaaacaccggacaaccaa
gcattgctcagtatgagtggagctgaaggtctttgtgagagcagtctggttaaatatcag
acagatgaagaaacaagcagttttagtagatcaggggagtcggggccagcagagaagacg
tggaggagtgaagaggactgggtctgttcacggcttttggagtggttgaacccgaagcct
ttgaacttcgatccagacgctgctgaagatgacacagttgttgccagtgatcccaggagg
agtgggattctggtgcactctgtcctccccgtggagccctgcaccagcctggatgatggc
cccatcacagaggctctccgctgggtgttgcggaggaagcagtacaccactctgtctcca
gctgactgttacagctggccagctgtggctcgaggatgcaacgctgtcatcgttgcccaa
aacgctgatcagccactcagctacatcgcccccctgctctcccacatccttctcaactcc
atcttcacctgcctcacctccacctcagggcccatagcagtgctgctgtgtccaggctgg
gagaaagcccaggcggtgtatgacctgctggaggagattaaggctaccaaagtcctccac
cctgccatcttgctgctgggcgtcggcaaagacgaggccaaggatgtcaggatccccaaa
aactgcctgctgttggtgacgactccgttcagttttgttcgtctgctgtcctgccactgc
ttcctgttcctgcgcctgtaccaccttgtgctggacgaggccgaccagctgttttctctc
gctccagatcagatggcgaccattttgcagcatttccagaaggtgaccaccagcgaggag
aaggcttcctgtcctcagcagctcgttgctgtggcgaaaagatggaacagtcacatggag
ggtttgttagccaatcacatgccgtgcccctgcattgtcatgactgtccccgaggaggct
gctctctatggtaacgttcagcagatcatcctcatgactctagagagcagcaaggtctca
gtactgttgggtgcacttgatttcaaccccgttgtcggccagaagactctgatcgtagcc
aactctgctcaggaggtcgaagacgtgttcaaggccgtgagcaacaaatcagcattctgc
ctcaagacccacgaaggtttaacacacgagtttgactttgtcattcagcagtggaggaag
gacattgggcccagcactcatgttattctggtgaccaacaacgagtgtttgaagtgtctg
ggaatcagagatgcgacttgtgtggtccattatggcttccctacttcccccaaagtattc
ggcgagcggctcttctgcatggcggagaacttcagaaacctttctgaacgaggttcctct
caggatcaagcggggagccctcatccctccaggtcggtgctgctgatctctgagaggaac
gccggtcatgtagtcgggattctgcgttacctggggcgaaccaacgccccgttgccccct
gagctgctgtccttcgcacagggcgtccatgcggcccgggagaaccagaagaccaacaag
cctttctgcagctacctcaagagctttggagtctgcagagacagcagtgtgtgtcccgac
cgtcacagatacatttcccagctggatcagtctgggcttcctgcttcaggagtcatagaa
gttgtgcctatttacatcaagacggcatcagtgttctacggtcgtattgtccagaaggag
gacggaggtttccagagcatggcgtctgagatgacttcttactatgctaacaagaaacct
ggagtccacgaggtgctggagggaggcttatacgctgtgcaggaggacgaggttttccac
agggtgaagatcctgtccgtcccagacagaggtggccggctgtttttcagcgtctttgct
cggtttattgatgtgggaaaggaggaggaggtcaaatcccatcagatcctccagctcccg
gagcagttccactctctgcccggccaggccgtggagatcatcgtctgccgggtcaaacca
gttgacgccgagaccgactggcaccccaaggttaccagggcgctcagccagaagatccga
ggcctgcagcaccgagccagagcagtcttcagcctgggaaacactgtttttgttgatccc
atggtccgtgtgaccaaggtgccgggtatgaaaactgtgatcaatgaatacaacgtgcag
tcggagatcctgaacacggggatgggagtcagcaacccagagcatctggacctgctgaag
gctctctgtcaagagagcaaagaggcgggtcacgttaacgggtcggggaatggtccggcg
tctctggaagacaggatcaaagctgaggaggaagttctggctgaagccttcagagccgct
gaggccaatcggctcgccgaacttcctcacctcgctgacattcctcccctcgagccatgt
gagccactaagtccagtatttccagtgatccggtccctggtcccagaaccaccagtacca
agggcacctaaactccacctggttccagtgtgtgttcagaagatcctgtcggccggccag
acagctatcgaactgagaaacgcccacactgttgatctgaagtcagctgagcagatcatg
aggatcggagatggaggagaactttgccccatgaccagccaggctgcctgtctcaaaccc
aaggaaaacggtgttaacggaggtgaccatgaaagcaacattcagcaggtcatcggcact
aaagagagagactgtgatgactccacaaaaagtttccaccctcaggcccgttggtaccag
acgtccgactctgcgattgtgacggtgaagctgataaaccccgagagccagcgctgtgat
ttctaccccgacagagtcgtttacagtggcagagcgaacggtcggacctacagagccgac
ctgcagcttcacggcaacatcgctgcggaccgctgcagctgggaaatgaagtccaatgag
cccgttctcaaactggttaaacaacagccgggaaactgggaaaggcttctcaggagcaag
aatatttttgtgagttacgacatggatcactttgtagaggatgaagacaaaaccccaaat
ggtctgtgttttgtagagaacacgggaaacgacaactggtatgtgaactctgagaccgac
agtgacagcgactga
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integrated database retrieval system
