Sander lucioperca (pikeperch): 116036803
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Entry
116036803 CDS
T07345
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sluc04121
]
116036803 (pdzrn3b)
Enzymes [BR:
sluc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116036803 (pdzrn3b)
Ubiquitin system [BR:
sluc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
116036803 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Prok-RING_4
zf-TRAF
PDZ_Tricorn
Sina_ZnF
U-box
zf-rbx1
zf-RING_6
IBR_1
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
116036803
NCBI-ProteinID:
XP_031136328
Ensembl:
ENSSLUG00000010409
LinkDB
All DBs
Position
6:complement(41598179..41706370)
Genome browser
AA seq
1047 aa
AA seq
DB search
MGFELDRFKGTVDPDFKCNLCNKVLEDPLTTPCGHVFCSGCVLPWVVQQSSCPVNCQRIS
TKELNHVLPLKNLILKLEIKCDNHARGCDAVVKLQHLAEHAEMCDYSPEKCRNKGCNEVL
SLRDMDAHMRDTCDYRPVGICESGCGLMLTHKEQKLNSHCCMRALKAHNSALHCKIISLD
REFKKQTIKANKREKSLLAQLSAVHTELQMTALKYQKKFTEYSERIDSLTKTVAFSCKEG
ETLSLTVVLLREDGSLGFNIIGGRPCADDNDSTSNEGIFVSKIIEEGPADKEEGLQIHDR
IIEVNGKDLSKATHDQAVEAFRTAKEPIMVQVLRRAPRPKVVSPAGDTQVSDISTQTDIT
LQHIMALTKLSPSSPPMTELEEYLLPEEHPPHAYFDPNDFLEVIQQDIEREELEYEEVDL
YRASIQEKLGLTICYRTDDEDEAGIYISEIDPNSIAAKDGRIREGDKIIQINGVEIQNRE
DAVALLTSEGNQNISLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTASR
LQQKKHEEDGGTTDTATLLSNHHEKDSGVGRTDESTRNDESSEQENLGDDHTTNTLGSCR
KLTYSQDTLGSTDLPFSSESFISVDYADTDFLGIPADECERFRELLELKCQMRSGGAQGL
YYQGGGAGGQDQECVDKELEMLNEELRTIELECLNIVRAHKMQQLREQCRESWMLHNSGF
RNYNTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRRGAENQ
GPAGASGSASSSGRILKPLLSPVQEACGPSRSRGSSKDPDGALQAESKERKLGESSKSGR
SFSQPHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCRDAISPSDLEPKM
EWKVKIRSDGTRYITKRPVRDKLLRERALRIHEERSGMTTDDDAISELKMGRYWSKEERK
QHAVRAKEQRQRREFMKQSRADCLKEQAGPEDKKEPNIIELSHKKMMKKRNKKIFDNWMT
IQELLTHGTKSPDGTRVYNSLLSVTTV
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagctggaccgcttcaaggggaccgtggacccggattttaaatgcaacttg
tgcaataaagtcctggaagacccgctgacgactccgtgcggtcacgtcttctgctccggc
tgcgtgctgccctgggtcgtccagcagagcagctgccccgtcaattgtcagcggatctcc
accaaagagctgaaccacgtcctgcctctgaaaaacctcatcctgaagctggagatcaaa
tgtgacaaccacgcgaggggctgcgatgcggtggtgaagctgcagcatctggccgagcac
gccgagatgtgcgactactccccggagaagtgcaggaataaaggatgcaacgaggtgctt
agcctccgggacatggatgctcatatgcgggatacttgcgactacagaccggtggggata
tgcgagagcggctgcggattgatgctcactcataaagagcagaaattaaacagccactgc
tgtatgagagccctgaaggcgcacaacagcgcgctgcactgcaaaattatcagcctggat
agagagttcaagaagcagactattaaagccaacaagagagagaagtcactcctggcacaa
ctttccgccgtgcacaccgagctgcaaatgacagctctgaaatatcagaagaaattcaca
gagtacagcgagaggatcgattccttaaccaagaccgtggctttctcctgcaaggaaggc
gagactttaagcttgacggttgtccttcttcgtgaggacggatctctgggttttaacatc
ataggaggaaggccatgcgcggacgacaatgacagcacttcgaatgaaggaatctttgta
tccaagatcatcgaggaaggtccggcggacaaggaagaaggccttcaaatccacgacaga
ataatagaggtcaatggcaaggacctgtccaaggccacccacgaccaggcggtggaggct
ttccgcaccgccaaggagcccatcatggtccaggttctgcgccgtgccccacgtcccaaa
gtggtcagcccggctggtgacacccaggtctcagacatcagcacccagaccgacatcacc
ctccagcacatcatggccctcaccaagctgtctccctcttcaccccccatgacggagctg
gaggagtatctgcttccagaggagcatcctccacatgcatactttgaccccaatgacttc
ctggaggtgatacagcaggacatagagcgcgaggagctggaatatgaggaagtggatttg
taccgggccagtatccaagagaagctcggcctgacaatctgctacaggactgatgatgaa
gatgaggctgggatctacattagtgagattgatccaaacagcatcgctgccaaggacggc
aggattagagaaggggacaaaatcattcagatcaatggcgttgagatccagaaccgggag
gatgctgtagcgctgctgaccagtgaggggaaccagaatatctctctgctggtggccaga
ccagagatccagctggacgagggttggatggatgatgacaggaacgacttcctggatgac
ctccacatggacatgctggagcagcagcaccatcaggccatgcagttcactgccagcaga
ctgcagcagaagaagcacgaggaggatggaggcaccacagacacggccacattgctgtcc
aaccaccacgagaaggacagcggggtgggtcgcacagacgagagtacgcgaaacgacgag
agctcggagcaggagaacctcggcgacgaccacaccaccaacacgctgggcagctgcagg
aagctcacctacagccaggacacccttggcagcaccgacctgcccttcagcagcgagtcg
ttcatctccgtcgactacgctgacactgacttcctgggtatcccggcggatgagtgcgaa
cgcttcagagaactcctggagctgaagtgccagatgaggagcggtggagcccagggttta
tactaccaggggggtggggctggaggtcaggaccaagagtgtgtggacaaagagctggag
atgctcaacgaggagctgcgcaccatcgagctggagtgcttgaacatcgtccgcgctcac
aagatgcagcagctgagggagcagtgccgcgagtcctggatgctccacaacagtggcttc
cgcaactacaataccagcatcgacgcacgtcggcacgagctctcagacatcacggagctg
ccggagaaatcggacaaggacagctccagtgcctacaacactggcgagagctgccgcagc
acccctctcacattggagctctctccagacaactcgctccgtcgaggagcggagaatcag
ggtccggctggtgcgtccggctccgccagctctagtggaaggatcctcaaacctctcctg
tcccccgtccaggaagcctgtggccccagtcgcagcagaggctcctccaaggatccagat
ggagccttgcaagcagagagcaaggagaggaagttgggagagtccagtaagtccgggcgg
agcttttcccagccacattcaccgtacaagcatgcccacatcccggcccacgcccagcac
taccagagctacatgcagctgatccagcagaaatccgccgtggagtacgcccagagccaa
atgagtctggtcagcatgtgccgagatgccatcagccccagtgacctggagcctaagatg
gagtggaaggtgaagatccgcagcgacggcacacgctacatcaccaagcggcctgtccgg
gacaagctgctgagggagcgcgccctgcgcattcacgaggaacgcagcggtatgaccaca
gatgatgacgccataagcgagctgaagatgggccgctactggagcaaggaggagaggaag
cagcacgccgtccgcgccaaggagcagaggcagcgccgcgagttcatgaagcagagtcgg
gccgattgtctgaaggagcaggccggcccagaggacaaaaaggagcccaacatcatcgaa
ctcagccacaaaaagatgatgaaaaagagaaataagaaaatatttgacaactggatgacc
atccaggaactgctgacccatggtaccaagtcaccagatggcacaagggtttacaactca
ctgctgtctgtgaccacagtctaa
DBGET
integrated database retrieval system
