Sander lucioperca (pikeperch): 116037019
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Entry
116037019 CDS
T07345
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03030
DNA replication
sluc03420
Nucleotide excision repair
sluc03430
Mismatch repair
sluc03440
Homologous recombination
sluc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116037019
03420 Nucleotide excision repair
116037019
03430 Mismatch repair
116037019
03440 Homologous recombination
116037019
03460 Fanconi anemia pathway
116037019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sluc03000
]
116037019
03032 DNA replication proteins [BR:
sluc03032
]
116037019
03400 DNA repair and recombination proteins [BR:
sluc03400
]
116037019
Transcription factors [BR:
sluc03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
116037019
DNA replication proteins [BR:
sluc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
116037019
DNA repair and recombination proteins [BR:
sluc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
116037019
MMR (mismatch excision repair)
116037019
DSBR (double strand breaks repair)
HR (homologous recombination)
116037019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
SOG2
CATSPERD-E_C
zf-like
IBR
Motif
Other DBs
NCBI-GeneID:
116037019
NCBI-ProteinID:
XP_031136619
Ensembl:
ENSSLUG00000009225
LinkDB
All DBs
Position
13:17377480..17423173
Genome browser
AA seq
681 aa
AA seq
DB search
MGELLTQGAIEALLKGSPMSNPVLQLLNLRQVSNGSGPPRFRLIMSDGQHYFTSFLLATQ
LNNLHEENLLVPNCVCMLKKTTVNTLSDGRRVVVVMDMEILQSAEETGGKIGNPTLYNTV
DMSSPQQSASSTSVPASPPSAAVPGPSYKNSSTLSPPRGFTGKSPMKASPMKFSPMKASP
MASPMKASPMASPMKASPMKFSPMKASPMKASPTKFSPMKASPTKFSPMKFSPKTFSPMK
ATSTSPGSSTKVIPIAILNPYQSKWTVRARVTNKSSIRTWSNSKGEGKLFSFEIVDESGE
IKITAFNNEVDKFFSLVEQGKVYYITKATLKVANKQYNTLKNNYEMTLHAQSSIVPCDDN
QGIPAVHCDFVPIAELENRDKDTIIDVIGVCKSAEDVSRITTKTSREVSKRALNLIDTTG
KVVTVTLWGEEAEKFDGSGEPVVAIKGARLSDFGGISLSALFSSTVMVNPDIPEAFSLRA
WYDQRGYALDSQSLTETRSVGSRAKMNWKTLSDVKNEQLGQAEKTDYFSCMATVLYTRKE
NCLYQACPSADCNKKVIDQQNGLYRCEKCNQEFPNFKYRLILSANLADFGDNQWVTCFQE
TAEVLLGHSAETLGQLRDTDEAAFDEVFQKTNYTTHIFRNKVKLETYNDESRVKVTVMEV
QPVDHREYSRRLLSNIRKLAR
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaactactcacacagggggcaattgaagccctgttaaaaggatcaccgatgagc
aacccagtgctgcagctgctgaacctccgtcaggtcagtaatggctctggtccacccagg
ttccggcttataatgagtgatggtcagcactattttacttctttcctgctggccacacag
ttgaacaatctgcacgaagagaacctcctggtacctaactgtgtgtgtatgttgaagaag
acaaccgtcaacacattgtcagatggcaggcgtgtggtggttgtgatggacatggagata
ctgcaatcggccgaggaaacaggagggaagattggaaatcccactctatataatacagtt
gacatgtcatctccacagcagtcggcctcaagtacctctgtcccggcctcccctccatct
gctgcagtacccggaccctcctataagaacagcagcaccctttctcctccccgaggtttt
acgggaaagtcacccatgaaggcttcaccaatgaagttttcacccatgaaggcttcacca
atggcttcacccatgaaggcttcaccaatggcttcacccatgaaggcttcaccaatgaag
ttttcacccatgaaggcttcacccatgaaggcttcgccaacgaagttttcacccatgaag
gcttcgccaacgaagttttcacccatgaagttttccccaaagacgttttcacccatgaag
gctaccagcacttctcctggttcttcaacaaaagtgattcctatagcaatccttaacccc
taccaaagcaagtggactgtcagagcccgagtcaccaacaagtccagtatccgcacctgg
agtaactctaaaggagagggcaagcttttctcctttgagatagtggatgagagtggagaa
atcaagattacagcctttaacaacgaagtggacaagtttttctctctagtggagcaaggc
aaggtgtactacataaccaaggctacgctgaaggtggccaacaaacagtacaacacactg
aagaacaactacgagatgaccctccatgctcaatcatccattgtgccatgtgatgacaat
cagggcatccctgcagtgcactgtgactttgtgcccattgcagagctggagaaccgagac
aaggacaccatcattgatgtgattggagtgtgtaagagtgctgaggatgtatcacgtatc
accactaagaccagcagagaagtctccaagagggccctcaacctaatagacacaactggc
aaagtggtgactgtcacactgtggggagaggaggcggagaagtttgatggttctggggag
cctgtagtcgccatcaaaggagctcgcttatctgattttgggggcatatctctctctgct
ttgttcagttcaacagtcatggtcaacccagacataccggaggcctttagtctccgggcc
tggtatgaccagagaggctatgcgctcgacagccaatccctgacagagacgaggtcagtg
gggagcagagcaaagatgaactggaaaacactgagcgacgttaagaatgaacagttggga
caagcagagaagacggactatttcagctgcatggcgacagtgctatacactcgtaaggag
aattgtctataccaggcctgtccatctgcagactgcaacaagaaggtcatcgaccaacaa
aacggactgtaccgctgtgaaaagtgtaaccaagagttccctaactttaaatacaggctc
atactttctgccaacttagcagacttcggggataaccagtgggtgacatgcttccaggag
acagctgaggtcctgttaggtcatagtgcagaaacactgggacagctcagagacacagac
gaggctgcatttgatgaagtttttcagaaaaccaactacacaactcacatctttagaaac
aaagtcaagttggagacatacaacgatgagagtcgagtaaaggtaactgtaatggaagtc
cagccagtcgaccacagggagtacagcaggagacttctcagtaacatccgtaaattggcc
agatga
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integrated database retrieval system
