Sander lucioperca (pikeperch): 116037277
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Entry
116037277 CDS
T07345
Symbol
rc3h1b
Name
(RefSeq) roquin-1b isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sluc03000
]
116037277 (rc3h1b)
04121 Ubiquitin system [BR:
sluc04121
]
116037277 (rc3h1b)
Transcription factors [BR:
sluc03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
116037277 (rc3h1b)
Ubiquitin system [BR:
sluc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116037277 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
Prok-RING_4
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
116037277
NCBI-ProteinID:
XP_031136961
Ensembl:
ENSSLUG00000024025
LinkDB
All DBs
Position
9:13017551..13037896
Genome browser
AA seq
1135 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKAQPVALITSPEDSQHYEEARQCVEELALYLKPLSNTRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGSGGLMPDEGLPLDVAVTRKPS
PLTNGSGGHSLPQLIARGTDTVSYELLRKPMKMDGGSPSAPGSPPDGMDPGLPKPGMPLP
PHAMAHQRMPVDHLSGVKHMPVVARGSPVYTQPPHPEMCYDTRPPPSASQYDPPQYPTGY
PYQQQPQYVPRDYMRNPPPPSESGPPYQDPYPGYGPPERPYQAPHSGPPFSYPHPPHHDR
GRHGTYTGPPPPPQPYPSQRDGLVRMSPAPLDMPPPSAGQANSLYHQEPSARDRYPPDGY
YTQNAQPPPMRAYGRGPSYSGSQPSLDYLHRRRQELLSQLEERKVISPPPFAASPVSHPF
PSDYPPEYGEESSKNMVKCREPDYAGQYSPWSCETIGSYIGTKDAKPKDVMVPGTMDMMN
AEAKGLREPSLEAPRRGAEVKDDDPIIPFGPQPTVSRFGAISRTSKMGYQTAGPVQAMAS
TPQNPSSKHMAMSAEYTYGSHGGWGGASYPSHQTASSSQGHFSERLPMAAPDREQLKIEL
QQVNQQINQQTQMRSMEAASNSLLLQREASALAGQPGQPSQSQVSVAQQQAKWPAGGAST
TAVSSEQLSMELHQVEREIGKRTREMALQENQVAHDVQQYKMKTAENGQPEHKTQLEEIS
LALGEVSNGSSSLQESAVGGSMLSLTNKTSAMSLCSDPGATGSEMQKNGVVHSCS
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaagcaccacaatggacagagttcctgctgtgccccatctgcacacagaca
tttgaggagactgttcgccggcccatcagcttgggctgtggacatactgtctgcaagatg
tgcctgaacaagttgcaccgtaaggcctgtccctttgaccagacagccatcagcacagac
atcgagcagctacctgtcaacacagccctgttgcagctggtgggaggccaggttcctaag
gctcagccagttgccttgattaccagtccagaggactcgcagcattatgaggaggcccgg
cagtgtgtggaggagctggccctctacctcaaacctctcagcaacaccagaggtgtgggc
ctgagcagcacggcccagagcatgctgagtcgacccatgcagaggaaattggtaactctg
gtccactgccagctggttgaggaggagggtcgcgttagagccatgagagctgcccgctct
ctgggtgagcgaaccgttaccgaactcatcttgcagcaccagaatccacagcagctctcc
tccaatctgtgggccgctgtgcgtgcacgaggatgtcagtttcttggcccagccatgcag
gaggaagctctaaagttggttcttcttgctctagaggatggctctgctctgtccaggaag
gtgttggttctctttgtggtccagagacttgagccacgcttcccgcaggcttctaagact
agcataggccatgtggtgcagctcctctacagggcctcctgcttcaaggtgaccaaacgt
gatgaagattcatccctgatgcagctgaaagaggagttccgtacttacgaggctctgcgg
cgcgagcatgactctcagatagttcagattgccatggagggtgggctgcgcatcgcacct
gaccagtggtcttctctgttatatggagatcagtctcacaagtcacacatgcagtctatc
atagataagctgcagaccccggcgtcttttgctcagagtgtccaggagctgacgattgcc
ctgcagaggaccggagacccagccaacctcaacaggctgcggccccacctggaactactg
gccaacattgatcccagtcctgatgctccccctcccacatgggagcagcttgagaaaggg
ttggtagcagtgaaaacagtggtgcatggcctggtggacttcatccagaaccacagcaag
aaaggagctgaccctcaacagcctcctcagcacagcaagtataagacatacatgtgtcgt
gacatgaagcagaagggaggctgtcctcgaggagccagctgcacctttgctcattctcag
gaagaactggagaagtatcgtaaaatgaataagcgtctggcagcgcgcctccctggctca
ggagggctcatgccagatgagggccttcctctcgatgtagcagtgacccggaagccttca
cccctcaccaacggtagtggtggacactctttgccccaactcattgcccgtggcaccgac
acagtctcatatgaactgttgcgtaaacccatgaagatggatggagggagtcccagtgcc
ccaggatcaccacctgatggtatggaccctgggctacccaaacctggtatgcctctgcca
cctcatgccatggcccaccaaaggatgccagtggaccacctctctggggtgaagcacatg
cctgtggtagccaggggttcaccagtgtatacccagccaccgcaccctgagatgtgctat
gacacccgcccaccaccttcggcttctcagtatgaccctccacaataccccacagggtac
ccctaccaacagcaaccacagtatgtcccccgggattacatgcgtaaccctcctcccccc
agtgagtcaggacccccttaccaggacccctaccctggctacggccctccagagcgcccc
tatcaggcccctcactctggtccacctttctcttaccctcatcctccacaccatgaccga
ggtcgccacgggacctacactggcccaccacctcccccacagccttatccatctcagagg
gatggcctggtcagaatgagtcccgcacctctggatatgcccccaccatcagcaggacag
gctaactccctttatcaccaggagcccagtgcccgtgatagataccctccagatggctac
tatacacagaatgctcagcctccacccatgagggcttatggaaggggaccatcatatagt
ggttcacagcccagcctggactacctgcaccgacgtcggcaggagctgttatcccagctg
gaggaaaggaaggtcatctcccctccaccattcgctgcctcccccgtttctcatcccttc
cccagcgactaccctccagagtatggcgaggagagctccaaaaacatggtgaaatgcaga
gaacctgactatgcagggcagtactctccctggtcttgtgaaaccattggctcctacatt
ggcacaaaggatgccaaacccaaagacgttatggttcctggtaccatggacatgatgaat
gcggaggctaagggtctgagggaaccatcgctggaggctcctcggaggggtgcagaagtc
aaagacgatgaccctattatcccatttggcccccagcctaccgtgtcgcgcttcggtgcc
atctcccgcacctcaaagatgggctaccagaccgcaggccctgtgcaggctatggcctcc
acgccccagaacccaagctctaaacatatggccatgtcagcagaatacacatatgggagc
catggaggatggggtggagcttcatacccctcccaccagactgcctcctcctctcaggga
catttcagtgaacgcctacctatggcagccccagacagagaacagttaaagattgagctg
caacaggtcaaccagcagatcaaccaacagacccaaatgcgaagcatggaggctgccagt
aactctttactgctgcagagggaggccagtgcattggcaggccagcctgggcagcccagc
cagagccaggtgtcagtagctcagcagcaggccaagtggccagcagggggagcaagtaca
acagcagtctccagtgaacagctaagcatggagctccaccaggtggagagagagattggc
aagaggacccgtgagatggctttgcaggaaaaccaagtagcccatgatgttcagcagtac
aagatgaagacagcagagaatggacaaccagagcacaaaactcagctggaagaaatctcc
ctggctcttggcgaggtgtcaaatggctccagcagtctgcaagaaagtgcagtgggcggg
tccatgctgtcactgaccaataagacgtctgcgatgagcctgtgctctgatccaggtgcc
actgggtcagagatgcagaagaatggcgtcgtccattcctgctcttag
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integrated database retrieval system
