Sander lucioperca (pikeperch): 116037484
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Entry
116037484 CDS
T07345
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116037484 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sluc03041
]
116037484 (prpf4)
Spliceosome [BR:
sluc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
116037484 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_EML
NBCH_WD40
PRP4
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Ge1_WD40
Beta-prop_Vps41
WD_LRWD1
Beta-prop_IFT140_1st
WD40_like
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_WDR11_1st
Beta-prop_WDR35_TULP_N
DUF7779
Motif
Other DBs
NCBI-GeneID:
116037484
NCBI-ProteinID:
XP_031137245
Ensembl:
ENSSLUG00000005423
LinkDB
All DBs
Position
14:29096746..29109887
Genome browser
AA seq
524 aa
AA seq
DB search
MNAVASFPSRQFEERGTKMSDSEDAAPAMKRTRVYYGSLEEKERERLGADTLRGSDAVKA
GIEAGNINISSGETMDMEERVSERQQEALAAFERRRRARQIMVSTDDAEVKAGLRALGEP
ITLFGEGPADRRERLRSVLSVVGPDALKKSRRDEERAKRSQDECQQTWYHEGSAHLKDAR
LWLAKYSLPRARRRLEAARAQREVAEATRAIRQQEMHKSLRNLNNFCSQIGDDRPISFCH
FSPDSKMLATASWSGLCKLWSVPDCSLIRTLRGHNTNVGSIVFRPQAGVSLDQSDVSLAS
CATDGSVKLWNLESDEPVADIEGHSERVSRVSWHPSGRFLGTTSYDNSWRLWDLEVQEEI
LHQEGHSKGVHDIHFHPDGSLAATGGLDAFGRVWDLRTGRCVVFLEGHLKEIYSVHFSPN
GYHIATGSGDNTCKVWELRNRKCLYTVPAHQNLVSAVRFQPTDGHFLLTGAYDNTAKVWS
HPGWTPLKTLAGHEGKVMGVDVSPDGKLIATSSYDRTFKLWLTE
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccgtcgcttcgtttccctccagacagtttgaggagagaggaaccaagatgtct
gactctgaggacgcggccccggccatgaagaggacgcgtgtttactatggcagcctggag
gagaaggagcgcgagcgtctgggcgccgacacgctgagaggaagtgatgcggtgaaggcc
gggatcgaggcgggaaacatcaacatctcctcaggggagaccatggacatggaggagcgc
gtcagcgagcgtcagcaggaagcactcgctgcgtttgagcgccgacggcgagcgcggcag
atcatggtttccacggacgacgccgaggtgaaggccggcctccgggcgctcggggagcca
atcacgctgttcggagagggaccagctgaccgccgggagaggctgcgcagcgttctgtcg
gtcgtcggtccggacgctctgaagaaatcacggagagacgaagagagagctaagagatca
caggacgagtgccagcagacgtggtaccacgaaggctccgcccacctgaaggacgctcgc
ctctggttggccaaatactctctgccacgggcgaggaggcgtctggaggccgcacgcgct
cagagggaggtcgccgaggcaaccagggcgatccggcaacaagagatgcacaagagcctg
aggaatctgaacaacttctgcagtcagatcggagacgatcgaccaatcagcttctgccat
ttcagccccgactccaagatgctggccacggcctcctggagcggtctgtgtaagctgtgg
tccgtccccgactgcagtctgatccgaactctcagaggacacaacaccaacgttggttcc
attgtcttccgcccgcaggccggagtctctctcgaccaatcagacgtcagcttggcctcg
tgtgccacagacggctcagtgaagctgtggaacctcgagagcgatgagccggtggcggac
atcgagggtcacagtgagcgagtgtcccgagtgtcctggcatccatcagggaggtttctg
ggaactaccagttatgataactcgtggcgtctgtgggatctggaggtccaggaggagatc
ctccatcaggaaggacacagcaaaggagtccacgacatccacttccaccctgacggctcg
ctggctgctactggagggctggatgcgttcggcagagtgtgggacctgaggacaggacgc
tgcgtggtctttctggagggacacctgaaggagatctacagcgtgcacttctcccccaac
gggtaccacatagcgacaggaagtggagataacacctgtaaggtgtgggagctgagaaac
aggaagtgcctgtacacagtccccgcccaccagaacctggtgtccgccgtccgcttccaa
cccacagatggtcacttcctgttgacgggagcgtacgacaacacggcgaaggtgtggagc
cacccgggctggacgccactgaagacgctcgccggacacgaggggaaggtgatgggcgtt
gacgtgtctccagatggtaaactcatcgccacgtcttcctacgaccgaaccttcaaactc
tggctgactgagtga
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