Sander lucioperca (pikeperch): 116038179
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Entry
116038179 CDS
T07345
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H-like isoform X1
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc04010
MAPK signaling pathway
sluc04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
116038179
04020 Calcium signaling pathway
116038179
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sluc04040
]
116038179
Ion channels [BR:
sluc04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
116038179
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
116038179
NCBI-ProteinID:
XP_031138253
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Position
11:complement(18933404..18957872)
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AA seq
1405 aa
AA seq
DB search
MTDFERQKEEQRREVAIAIPLQEVANPHPQEEQLPYPTLAPVAVTCLKPSRRLRNWCLQV
AYSPWFVYLTVAMILFRCASLSYYKPGEMKSTMQEIVDALIFIYFIVEMLIKMMVLGVFG
YRGSYFSNNWNKLDFIINCGEMLDFILENCGIHFQFCQVLSPLRLISRVPSMLDVVTVLL
GIVPMLANVLVVYIFIIQIFAVVGVQLWAGQLRNRCFLGEDIPTKYNVSLNPYYMNKYGE
KLPFICSPDGKSGMQRCHDVPPYNINGENCSLAAHHYASAVDELVSTVAGASANACVNWN
MYYNVCRPGDHNPYMGTISFDNIGYAWITIFQVVSLEGWAEIMFYVIDAHCWWSVLFFVL
VTVMGSFIMMNVCAVVIATQFSDNMKQETAEQSVGAVAIAWLYGKLTGWLQGISRKFNRL
HNQVHPHGGSSRIDDPVIFQVWRPFMQKLKRTVNSKLFDRLIMFAVFLNIVTIAIEHHDQ
PKKLTDMLQISNIVFTIIFVVELVLKLLALTWTYFRDWNNIFDFVIVIISLWEIISNADG
RLSVLRAFRLLRFVRLLHFLPYLKRQLLVLKRTMKEASTLCMLLLFVIFIFSVMGMHLFG
GKYYYETQHGEVIVERKNFDTLLWAMVTVFQILTQENWNLVMYNAMATTSEWGCSYFVVV
IILGKHVLLNILVGIVVQSFQARHFSGMDQDSSRPSCESTTSTPEILTPENPAQTDNDDR
NGPSGPNRGLSLSACWPSRFNAINAAPGEDSAPTDTNGDNRCLNLIQKTVSWCKEHEEWS
FYVFSPQNRFRICCQRLISHKMFDYMVLVFILLSCITIAVERPEINLKSTERWILNTAGY
VFSAVFFVEMLFKVIALGLLFGKESYCRSAWNAVDGFLVILSLVDILISLASTSGKHVLG
VLKVLRLLRAMRPLRVIKRAPKLKLAVEALLASVKPIGHIVLICCTFLFFYAILGVQLFK
GKFFYCVGQDTRNITNKTECLSANYRWERKVYKALQSLFVMYSKDGWVNIMYDGLDAVGV
DEQPVTNYNEWMLVYFITFMIMSFFLLDMFIGVMVETFHQCQQDKKKAALQALPQEAEVS
QDQCEDMHVSESEQIPYYEHYSSTRRSIHTFCTSNFLELFMAAIIFLSVLMMAFQHYDQP
PYVEKITDYSYYVFTVILIIEVLLKLVAFGLLRFIQSRWNLLDIAVVLISIISIILQEMD
MSDSIPINPSILRVCRVLRLAQVLKAKKIRVLLKTIIKTLSQVGNICLLFAFFFFVYAAL
GVELFGRLECTEDNVCLGLHRYTNFKHFGMALLTLYQVCTGDNWSGIMADTLRQCRPNDD
GCLSYLYWVSPIYFSTFVVMAQFVLVNLVVAAIMQALEDSHENKPTNVCLPLEEEEELER
ERATLSSGQSVGARCSHSNSEGSSE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgactgactttgagagacagaaggaggagcagcggcgggaggtggcaatcgctatacca
ttacaagaagttgccaacccacacccgcaggaggagcagctgccctacccgaccctggcc
cctgtagctgtcacctgcttaaaaccgtccagaagactccgtaactggtgtctgcaagtg
gcctatagcccatggtttgtgtatttgactgtagcgatgatcctcttcaggtgtgcaagt
ttgtcctactacaagccaggtgaaatgaagagcaccatgcaagagatagtggatgccttg
atctttatctactttattgtggaaatgctcatcaagatgatggtcctgggagtctttggc
tatagagggagttactttagcaacaactggaacaagctggacttcatcatcaactgtgga
gagatgttggattttatcttggaaaactgtggcatccacttccagttctgtcaagtgctc
tctccgttgcgactcatcagcagagtaccaagtatgctggatgtggtgacagtactctta
ggcatcgtgcccatgctagcaaatgttctggtcgtctacatcttcatcatacaaatcttt
gccgttgtgggagtccagctgtgggcggggcagctgcgcaaccgctgcttcctgggagag
gacattcccacaaagtacaacgtgtccttaaatccatattacatgaacaagtatggtgaa
aaactcccatttatctgttcgcctgatggcaagagcgggatgcaacgctgccatgatgtg
ccaccttacaacataaatggggaaaactgctcattggctgctcaccactatgcttcagct
gtagatgagcttgtctctacggtggctggggccagtgctaacgcctgtgtcaactggaac
atgtactacaatgtctgtcggcccggggaccacaacccttacatgggaacaattagcttc
gacaacattggctacgcctggataaccatattccaggttgtctcactggaaggatgggcg
gagatcatgttttatgttattgatgctcattgttggtggagtgttttattttttgtactc
gtcactgttatgggctcctttatcatgatgaacgtgtgtgcagtcgtcatcgccacccag
ttctcggacaacatgaaacaagaaacagcagagcagagtgtcggtgctgtggctatcgca
tggctctatggcaagttaactggatggctgcaggggatctcccgtaaattcaacagactt
cataaccaggtgcatcctcatggcggcagcagcaggattgatgacccagtgatctttcag
gtctggagaccattcatgcaaaaacttaagaggactgtcaacagtaaactcttcgaccga
ttgatcatgtttgctgttttcctcaatattgtcaccatagccatagagcatcatgaccag
cctaagaagttgacagatatgttacagatcagtaacattgtcttcaccattatatttgtt
gtggagttggtcttaaagctgctggctctcacgtggacatactttagggactggaacaac
atctttgactttgtcattgttatcatcagtttgtgggagataatatctaacgcagacggc
cggttgtcagttctgcgtgcatttcgtctgctgcggtttgtgaggctgcttcacttcctc
ccttacctgaagagacaactgctcgtgctgaagaggaccatgaaagaggcatccacactc
tgcatgctactgctgtttgtcatctttattttcagtgtaatgggtatgcacctgtttggt
ggtaaatattactacgagacgcagcacggagaagtcatcgttgagcgaaaaaactttgac
accctgctctgggccatggtcactgtgttccagattctgactcaggagaactggaatctg
gtgatgtacaacgccatggcaactacctccgaatggggctgtagctactttgttgtggtc
attatattgggaaaacatgttcttctcaatatacttgtgggcatagtggttcagagtttc
caggctaggcatttctcaggtatggatcaagactcttctcgcccttcctgtgagtctacc
acttccactccggaaatcttgacccctgaaaaccctgcacagacagataacgatgacaga
aacggcccctcaggacccaaccgaggcctctctctctctgcttgttggcccagcagattc
aatgcgattaacgctgctccaggagaagactctgcacctacagataccaatggggacaat
agatgtttgaacttgatccagaaaacggtcagctggtgcaaagaacatgaagagtggtcg
ttctatgtgttttctccacagaacaggttccgcatctgttgtcaacgcctgatctctcac
aagatgttcgactatatggttctggtcttcattctcctcagctgcatcaccatcgctgtg
gagaggcctgaaataaaccttaaaagcacggagcgttggatcctgaatacggccggttac
gtattctctgctgtcttctttgtagagatgctctttaaggttatagctcttggtttgctg
tttgggaaggagagctactgccggtctgcctggaatgctgtggatggttttttggtgatt
ctgtctttagtcgacatcttaatctctctggccagtacaagtggaaaacatgtgctgggc
gtgctcaaagttttgcgcctgctacgcgcaatgcgcccgctgagggtgatcaagcgagcc
ccaaaactgaagctggctgtggaagcccttctcgcctcggttaaacccatcgggcacatc
gttcttatttgctgcaccttcctctttttctatgccattcttggggtgcagttgttcaaa
gggaagttcttctactgtgtgggtcaggacacaagaaacatcaccaacaagactgaatgt
ctgtcggccaactatcgctgggaacgaaaggtgtacaaggctctgcagtccttgtttgta
atgtactctaaggatggctgggtgaacattatgtatgatggcctggatgctgtgggagta
gatgaacagcctgtaacgaactacaacgaatggatgcttgtttatttcatcaccttcatg
attatgagcttctttctcctcgacatgtttattggtgtaatggtggagaccttccaccag
tgtcagcaggataaaaaaaaagcagctttacaagcgttaccacaagaggccgaagtatca
caggaccagtgcgaggacatgcatgtttcagagtctgagcagattccatattacgaacat
tactcctctactcgtcggtctatccacactttttgtaccagtaacttcctggaactcttc
atggctgccataattttcctcagtgtcttaatgatggctttccaacattatgatcaacct
ccgtatgtagagaagattacagactattcctactatgtgttcaccgtcatcctgatcatc
gaagtcctgctaaagcttgtggcgtttggcttactgaggttcatacaaagcagatggaat
ctgctggacattgctgtcgttttgatttccataatcagtattattttacaagagatggat
atgtcagactcaattcccattaatcccagcatccttagagtctgtagagtactcagacta
gcacaagtgctgaaggccaaaaagatacgagttctgctgaaaaccattatcaagacgctg
tcacaggttggaaatatttgtctactttttgcattcttcttcttcgtctacgctgcgctg
ggagtggagctctttggcaggctagaatgcaccgaagataacgtttgcctgggtttacat
cgatacaccaactttaaacactttgggatggccctgctcacgctctaccaagtgtgcacc
ggagacaactggagcgggattatggcagacacattgaggcaatgccgtccaaacgatgat
ggctgtttgagctacttgtactgggtctctccgatctacttctccacttttgtggttatg
gcccagtttgtgctggtaaacctggtggtggcagcgatcatgcaagcactggaggacagc
cacgagaacaaacctactaatgtctgtctccccctggaggaggaagaagaactggagcgt
gagcgggccacgctgtcttcaggccagagtgtcggagccagatgcagccacagcaactcc
gagggatcctcagagtag
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