Sander lucioperca (pikeperch): 116039544
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Entry
116039544 CDS
T07345
Symbol
htt
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116039544 (htt)
04131 Membrane trafficking [BR:
sluc04131
]
116039544 (htt)
03029 Mitochondrial biogenesis [BR:
sluc03029
]
116039544 (htt)
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
116039544 (htt)
Membrane trafficking [BR:
sluc04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
116039544 (htt)
Mitochondrial biogenesis [BR:
sluc03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
116039544 (htt)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_EF3_N
HEAT_ECM29
Motif
Other DBs
NCBI-GeneID:
116039544
NCBI-ProteinID:
XP_031140248
Ensembl:
ENSSLUG00000018247
LinkDB
All DBs
Position
4:complement(6185866..6220067)
Genome browser
AA seq
3199 aa
AA seq
DB search
MATMEKLMKAFESLKSFQQQQGPPTAEELVQRQKKEQATTKKDRVTHCLTICENIVAQSL
SPGSRTSPEFQKLLGIAMEMFLLCSDDSESDVRMVADECLNKIIKALMDSNLPRLQLELY
KEIKKNGASRSLRAALWRFAELAHLIRPQKCRPYLVNLLPCLSRITKRQEETVQETLAAA
MPKIMAALGHFANDGEIKVLLKSFVANLKSSSPTIRRTAASSAVSVCQHSRRSSYFYTWL
LNVLLGLLIPVDEEHPSHLILGVLLTLRYLMPLLQQQVNTTSLKGSFGVMRKEADVQPTP
EQLLQVYELTLHYTQHWDHNVVTAALELLQQMFRTPPPELLHMLITAGSILHGTVFRQDT
ESRARSGSILELIAGGAPSCSPLLLRKPRGKMLSGEEDGLEDDAERTEVTAGAFTAAVVG
ADGSSTAQVDIITEQPRSSQHTLQPGDSVDLSASSEQGGGGGGTSASDTPESPNDNEEEM
LSRSSSGGANITPETADYTTPEMEGGPLGVGGTLLGTNDRSLPPSDSSQTTTEGPDSAVT
PSDVAELVLDGSESQYSGMQIGTLQDEEDEGAAPSSQEEPPEPFLQSALALSKPHLFDGR
GHNRQGSDGSVDRFLTKDEPAEPEPDNKPSRIKGPIGHYTDQGVEPLVHCVRLLAASFLL
TGRKNGLTPDKEVRVSVKALAVSCVGAAAALHPEAFFNSLYLEPLDGIPVEEQQYISDIL
GLIDHGDPQIRGATAILCAAIIQAALTKTRYNIHTWLASVQSATGNPLSLVDLVPLLQKT
LKDESSVTCKMACSAVRHCIMTVCSSTLSELGLQLLINLLALRDSSYWLVRTELLETLAE
MDFRLVNFLERKTETLHKGDHHYTGRLRLQDRVLNDVVICLLGDDDPRVRHVAASAVSRL
VSRLFYDCDQGQVDPVVAIARDQSSVYLQLLMHETQPPSQFTVSTITRTYRGYNLSNNVS
DVTIENNLSRVVTAVSHAFTSSTSRALTFGCCEALSLLASNFPVCTWSTGWHCGYVSSSS
SFSSRSSLNRSRGRALSVSQPCSAPASSTSSSAPDTERRTLTVGMANMVLSLLSSAWFPL
DLSSHQDALLLSGNLLAAVAPKCMCNPWAGEEDGTSGSTNTSGGPNKMEEPWAGLSERSL
VAMLEQLFSHLLKILNICAHVLDDTPPGPAVKATLPSLSNTPSLSPIRRKGKEKDVAEPS
AAPMSPKKSNEVNTGRPADSTGSTAVNKSTTLGNFYHLPPYLKLYDVLKATHANYKVTLD
LHSSQEKFGGFLRATLDVLSQLLELATLHDISKCVEEILGYLKSCFSREPTMATVCVQQL
LKTLFGTNLASQCEGVLSGPSRSQGKALRLGSSSLRPGLYHYCFMAPYTHFTQALADASL
RNMVQAEQEHDTSGWFDVMQKASNQLRSNIANATRNRGDKNAIHNHIRLFEPLVIKALKQ
YTTSTSVALQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRDSEAIIP
NIFFFLVLLSYERYHSKQIISIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGS
NKADAGKELDTQKEVVVSMLLRLVQHHQVLEMFILVLQQCHKENEDKWKRLSRQIADVIL
PLIAKQQMHLDSPEALGVLNTLFETVAPSSLRPVDMLLKSMFTTPVTMASVATVQLWVSG
ILAVLRVLISQSTEDIVLSRVHELSLTPHLLSCHTIRRLHQQSPSPCDPPAADELGIREA
NGEAQKALPEETFARFLLQLVGVLLDDISSRQVKVDITEQQHTFYCQQLGTLLMCLIHVF
KSGMFRRITAAASRLLKGEGGGGQTSTEAGLFYPLEGLNSMVQCLITTHPSLVLLWCQVL
LIIDYTNYSWWAEVHQTPRRHSHSCTKLLSPHSSGKGEEDKPETRLAMVNREIVRRGALI
LFCDYVCQNLHDSEHLTWLIVNHVRDLINLSHEPPVQDFISAVHRNTAASGLFIQAIQSR
CDNLSTPTMLKKTLQCLEGIHLSQSGSLLMLYVDKLLSTPFRVLARMVDTLACRRVEMLL
AETLQNSIAQLPVEELDRIQEYLQTSGLAQRHQRFYSLLDRFRATVADTSSPTPPVTSHP
LDGDPPPSPELVIADKEWYVALVNSQCCLRGDVSLLETTELLTKLPPTDLFNIMSCKEFN
LSLLCPCLSMGMQRLARGQGALLLETALQVTLERLAGVTGSLPVPHQSFLPPAQPQPYWS
QLAEVYDEPSFYPRVLSLCRALSQYLLSVSQLPPSLHIPSDKEHLITTFTCTAAEVVAWH
LLQNQLPLSVDLQWALSCLCLALQQPCVWNKLSTLEYTTHTCSLIYCLRLIIVAVAVSPG
DQLLHPEKKKMKAERDAEGDEVDSAHADHLCEWQACEIMAELVDGLQSILALGHHRNRAF
PAFLTPTLRNIVISLSRLPLVNSYTRVPPLVWKLGWSPQPGGEYGTTLPEIPVDFLQEKD
VFREFLYRINTLGWSSRTQFEETWATLLGVLVTQPITMDQEEETQQEEDLERTQLNVLAV
QAITSLVLSAMTLPTAGNPAVSCLEQQPRNKSLKALETRFGRKLAVIRGEVEREIQALVS
KRDNVHTHHPYHAWDPVPSLSAASAAGTLISHEKLLLQINTEREMGNMDYKLGQVSIHSV
WLGNNITPLREEEWGEDEEDEADTPAPTSPPISPINSRKHRAGVDIHSCSQFLLELYSQW
LIPGSPSNRRTPTILVSEVVRSLLAVSDLFTERNQFDMMFSTLMELQKLHPPEDEILNQY
LVPAICKAAAVLGMDKAIAEPVCRLLETTLRSTHLPSRMGALHGVLYVLECDLLDDTAKQ
LIPTVSEYLLSNLRAIAHCVNLHNQQHVLVMCAVAFYMMENYPLDVGAEFMAGIIQLCGV
MVSASEDSTPSVIYHCVLRGLERLLLSEQLSRVDGEALVKLSVDRVNMPSPHRAMAALGL
MLTCMYTAVLASGSDVTGVRGQVDSGSAVAEAVGVTAGHVGFSSGKEKASPAGRPAHSDP
QAPDSESIIVAMERVSVLFDRIRKGLPSEARVVSRILPQFLDDFFPPQDVMNKVIGEFLS
NLQPYPQFMATVVYKVFQTLHATGQSSMVRDWVLLSLSNFTQRTPVAMAMWSLSCFFVSA
STSQWISALLPHVISRMGSSEVVDVNLFCLVAMDFYRHQIDEELDRRAFQSVFETVASPG
SPYYQLLGCLQSIHQDTSL
NT seq
9600 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaaattgatgaaggccttcgagtctctgaagtcattccagcagcaa
cagggaccaccgaccgccgaggagcttgtccagaggcagaaaaaggaacaggctaccaca
aagaaggacagggtcacccactgcctgacaatatgtgaaaacattgtggctcagtctctg
agtcctgggagcagaacgtctccagagtttcagaaactgctgggcattgccatggagatg
ttcctgctctgcagtgatgacagcgaatccgatgtccggatggtagccgatgagtgcctg
aacaaaatcatcaaagcactgatggactccaacctgcctagactgcagctggagctgtat
aaagaaattaaaaagaacggtgcctctcggagtttgagggcagctttgtggaggtttgct
gagcttgctcacctcattagacctcagaaatgcagaccctacctggttaacctgttgcca
tgcctctcccgaatcaccaagcggcaggaggagacggtacaggagactctggctgccgca
atgcccaagatcatggccgccttgggacacttcgccaatgatggcgagatcaaggtgctg
ctgaagtcatttgtggccaacctgaagtccagctcccccaccatcagacggacagcagcc
agctcagccgtcagcgtgtgccaacactccagacgcagcagctacttctacacctggctc
cttaatgtgctgctgggtctgctgattccagtggatgaggagcaccccagccacctcatt
ctgggggtgctgttaacccttcgctacctgatgcctctgctgcagcagcaagtcaacacc
accagcctcaaaggaagctttggagtcatgaggaaggaggctgatgtacagccaacacct
gaacaactgctacaggtgtacgagctgaccttgcactacacacagcactgggatcacaat
gtggtcacggcagctctggagctcctgcagcagatgttcaggactcccccgccagagctt
ctgcacatgctcatcaccgcaggcagcattctccatggcaccgtgttccgccaggacact
gagagccgcgcgcgctccggcagcatcctcgagctcattgcaggtggagctccttcctgc
agtccactccttctcaggaaaccgagaggtaaaatgctctctggggaggaggatgggttg
gaggatgatgctgagagaacagaggtcaccgctggtgccttcacagcggcagttgttggt
gcagatggctcctccacagcccaggtggacatcatcacagagcagccgcgctcctcccag
cataccctgcagcctggagactcggtggacctcagtgcctcctcagagcagggcggcggc
ggaggcgggacatctgcatcagacactcctgagtcacccaacgacaacgaggaggagatg
ctaagtcggagctccagcggtggggccaacattactccagagacggctgactacactacg
ccagagatggagggagggcccttaggtgtaggtgggactctgctaggcactaacgatcgc
tcacttccacccagcgactcttcccagaccaccacggagggaccggactccgctgtcacc
ccttcggacgtagcagaactggtgctggatggcagtgagagccagtactctgggatgcag
atcgggacattacaggatgaagaagatgaaggagcagcaccttcctcccaagaagaaccc
ccagaaccattcctgcagtcagcactggctctgagcaaacctcatctctttgatggccga
ggtcacaaccggcagggttcagacggcagtgtggaccgcttcttaacaaaggacgaacct
gctgaacccgaacctgacaacaagccatcacggataaagggtccaatcggacattataca
gaccagggggtggagccactggtgcactgtgtaaggcttctcgcagcttcattcttactg
acgggaagaaaaaatggtctgacccctgacaaggaggtgcgagtgagtgtgaaggctctg
gcagtcagctgtgttggggcagcagcagcgctgcatcctgaagccttctttaactccctc
tacttggagccgctggatggcattccagtagaagagcagcagtatatcagtgacatcctg
ggtctcatcgaccatggggacccccagatcagaggtgccacagccatcctctgtgcagcc
atcatacaagccgcactcaccaaaacgcgttacaacatacacacctggctggccagtgtg
cagagtgcaacaggtaaccctctgtccctggtggacttggtgcctttgctccagaaaact
ctgaaagatgaatcctccgtcacctgcaagatggcttgctctgcagtgaggcactgcatc
atgactgtgtgcagcagtaccctgagcgagctcggcctgcagttgctgataaacctcctt
gctctgagggactcgtcctattggcttgttcgcactgagctcttggagaccttggctgag
atggacttccggttagttaatttcctggagaggaaaactgagactttgcacaaaggggat
catcactacactgggcggctgcggctacaggaccgagtcctgaatgatgtggtcatctgt
ctgttgggagatgatgaccccagagtccgacacgtggcagcctctgctgtcagcaggcta
gtttccaggttgttctatgactgtgaccagggtcaagtggacccagtagtggctattgcc
cgggaccagagttcggtctacctgcagctgctgatgcatgagacccaacccccctcccag
ttcacagttagtacaatcacaaggacgtacagaggctacaacttgtccaacaatgtgtct
gatgtgacaatcgagaacaatttgtccagagtcgtcactgccgtctcccacgctttcacc
tcctctacctccagggctctgacttttggctgctgtgaggccttgtccctcctggcttca
aatttcccagtgtgcacttggagtacaggctggcactgtggctatgtcagctccagtagc
agcttttcttcccgctctagtctcaaccgcagcaggggcagggccctcagtgtgtcacag
ccatgcagtgctccagcctcttcaacctcctcatctgcaccagacaccgagcggaggact
ctgaccgtaggaatggccaacatggtcctctccttactctcttctgcttggtttccactg
gatctctcttcacaccaggatgcgcttttgctttctggcaatctgcttgctgctgtagct
cctaaatgcatgtgcaacccctgggctggagaggaagacggcaccagtggtagcacaaac
accagtggaggtccaaataagatggaggaaccctgggcagggttgtctgagcgctccctg
gtggccatgttggagcaactcttctctcacctactgaagatcctcaacatctgtgcccat
gtgctggatgacacaccacctggaccagcggttaaggccaccctcccctccctgagcaac
accccctccctcagtcccatccggagaaaaggcaaggagaaggatgtcgctgagcccagt
gctgccccaatgagcccaaagaaaagcaatgaggtcaacacaggcaggccagcagacagc
actgggtcaacagctgtaaacaaatctaccacccttggcaacttctaccaccttccaccc
tacctcaagctctatgatgtccttaaagctacacatgccaactacaaggtaacgctggac
ctccacagtagccaggagaagtttggaggtttcctgcgtgccactctagatgttctgtca
cagctcctggagctggccacactacatgacatcagcaagtgtgtggaggaaatcttaggc
taccttaagtcctgcttctccagggaaccaaccatggctacagtttgtgtacagcagctg
ttgaagaccctgtttggcaccaacctggcctctcagtgcgagggcgtcctgagtggaccc
agccgttcccagggcaaggctctccgtcttggatcgtcgagtctgcgaccaggcctctac
cactactgcttcatggcgccgtacactcacttcactcaggctctcgccgatgccagtctc
cgtaacatggtgcaggctgaacaggagcacgacacctcgggatggtttgatgtgatgcaa
aaagcttcaaaccagctgaggtccaacattgcaaatgcaacacgcaacagaggagacaag
aatgccatccacaaccacattcgtctgtttgagccgctggtgatcaaagctttaaagcag
tacactaccagcacgtctgtggccctgcagagacaagtactggacctgctcgctcaactt
gtgcagcttagggtcaactactgcctgctggactcagatcaggtgttcataggctttgtc
ctgaagcagtttgagtacattgaagtgggacagttcagagattcggaggccatcattccc
aacatctttttcttcctggttctgttgtcgtatgagcgttaccactccaagcagataatc
agcatccccaagatcattcagctgtgtgacggcatcatggcgagcggcaggaaagcggtc
acacatgccatcccagccttgcagccaatagtccacgacctgtttgtgttgaggggctca
aacaaagcagatgcaggcaaagagctggatacgcagaaagaagtggtggtctccatgctg
ctccgacttgtgcaacaccatcaggtgttggagatgttcatcctagtgctgcagcagtgt
cacaaagagaacgaggacaagtggaagagattgtccaggcagattgctgacgtcatactt
cccttgattgctaagcagcagatgcacctggactctccggaggcgttgggagtgttgaac
actctgtttgagactgtggcgccctcctcgctcagacctgtagacatgctgctcaagagt
atgttcaccaccccggtcaccatggcatcagtggccacagtccagctgtgggtgtctggt
atcctggcagtgctcagggtactcatctcccagtccacggaggacatcgtcctgtcacgg
gtccacgaactctccctcaccccgcatctcctctcctgccacacaatccgtcgcctgcat
caacagagcccctccccatgtgacccacccgctgccgacgaactcggcatccgggaagct
aatggcgaggcacaaaaagccctgcctgaggaaacctttgccaggtttctgctccagctg
gtaggagtgttgctggatgacatttcctccagacaggttaaagtggacattacagagcag
caacacactttctactgccagcagctgggcacgctgctcatgtgtctcatacatgtcttc
aaaagtgggatgtttcgcaggatcacggctgcagcgagccgtctcctgaagggggagggt
ggaggtggacagacgagcaccgaggccggcctgttttaccccttggagggtctgaacagc
atggtgcagtgcctgatcaccacccacccctccttggtgctgctgtggtgccaggtcctc
ctcatcatcgactacaccaactactcctggtgggctgaggtgcaccagacacccaggaga
cacagccactcgtgcacgaagctgctgagccctcactcctcagggaaaggagaagaggac
aagcctgagactcggttagctatggtcaaccgagagatcgtacgcaggggagccctcatc
ctcttctgtgactatgtgtgtcagaaccttcatgactcggagcatctgacctggctgatt
gtcaaccacgtgcgtgacctcatcaacctttcccatgagcctccagtgcaagatttcatc
agcgctgtgcaccgcaacacagctgccagtggtcttttcatccaggccatccagtcccgc
tgtgacaacctcagtactcctaccatgttgaagaagactctgcagtgtttggaaggcatc
cacctgagtcagtctggctccctgctgatgctgtatgtggacaagctgcttagtacaccc
ttcagggttctagctcgcatggtggacacgctggcgtgtcgcagggtagagatgctgctg
gctgagacactacagaatagtatagctcagctgcctgtggaggaactagacaggatccag
gaatacctccagaccagtggcctggctcagaggcatcagaggttctactccctgctggac
aggttcagagccactgttgccgacaccagcagccccacacctcctgtgacatcacaccca
ttagatggggatccaccaccttcccctgagctggtcattgcagataaggagtggtacgtg
gctctggtgaactctcagtgttgtcttcgtggagatgtttccctgttggagacgacagaa
ctcctcaccaaactacctcccactgacctctttaacatcatgagctgcaaggagttcaac
ctaagcctgctgtgcccatgcctaagtatgggcatgcagcggttagcacggggtcagggg
gcgctcttgttggagacagccttgcaggtgaccctagagcggctcgcaggggtcaccggg
tcacttcctgtcccgcaccagtccttcctgccacccgcccagccacagccctactggagc
caactggctgaagtgtatgatgagccaagtttctaccccagggtgttgtcgctctgcaga
gctctgtcccagtacctgctgagtgtaagccagctgcctccctcactacatatcccctct
gacaaggaacatctcatcaccactttcacctgcactgccgctgaggtggtagcgtggcat
ctcctccagaaccagttgcccctgagtgtggacctgcagtgggctctgtcctgcctgtgt
ctggccctgcagcagccctgcgtgtggaataagctctccaccctagagtacactacacac
acctgctccctcatctactgcctacgcctgattattgttgcagtggctgttagtcctggt
gaccagcttctgcatccagagaagaaaaaaatgaaggcagagagagacgccgaaggagat
gaagtggactcggcacatgctgaccacctgtgcgagtggcaagcatgtgagatcatggcg
gagctggtggacggcctgcagagcatccttgcccttggtcaccatagaaaccgtgcattc
cccgcctttctcacaccaaccttacgcaacattgtcatcagtctgtcccgactgcctctg
gtcaacagctacactcgagtacctccactggtttggaaactgggctggtcccctcagcca
ggaggagagtacggcacaacgctgcctgagatccctgtcgacttcctgcaggaaaaggat
gtcttcagagagttcctctaccgcatcaacacactgggctggagcagcaggactcagttt
gaggagacctgggccacactgctgggggtgctggtcacccaacccatcactatggaccag
gaggaggagacgcagcaggaggaggacttggagcgtacccagttgaatgtgttagcagtg
caggccatcaccagcctggtgctgagtgccatgaccctgcccactgctggcaaccctgca
gtcagctgtctggaacagcagccccgcaacaagagcctcaaagccctagaaacgcggttt
gggaggaaacttgcagtgatcaggggcgaggtggagcgagagattcaggctctcgtgtct
aagagagacaacgttcatacacaccatccgtaccacgcctgggatcctgtaccctcgctg
tcggcagcctcagctgcaggcacgctgatcagccatgagaagctgctacttcagatcaac
acagagagggagatgggcaacatggactacaaactgggacaggtctccattcactcagtg
tggttaggtaacaacatcaccccactgagggaggaagagtggggtgaggatgaagaagat
gaagcagacactccagcccccacctccccacccatatctcctatcaactctaggaagcat
cgtgcaggtgtggacattcattcatgttcccagtttctgctggagctctacagccagtgg
ctgatccctggctccccgagtaacaggaggaccccaaccatcctcgtcagtgaagtggtt
cgatcgctgctggcggtgtcagacctgttcacagagcggaaccagtttgacatgatgttc
tccaccctgatggaactgcagaagctccacccgccagaggatgagatcctcaatcaatac
ctggtgcctgccatctgcaaggctgctgccgttctgggcatggacaaagcaatagcggag
cctgtgtgtcgcctgttggagaccactctgcgcagcacccacctgcccagccgcatgggg
gctctacatggagtgctgtatgtgttggagtgtgacttgctggatgacaccgccaaacag
ctcatccccaccgtctcggagtaccttctgtccaacctcagggctatcgctcactgtgtc
aacctgcataaccagcagcacgtgttggtaatgtgcgcagtggctttctacatgatggag
aactaccctctggatgtaggagctgagtttatggctggaattatacagttgtgtggtgtg
atggtgtcggccagcgaggactccactccctccgtcatctatcactgtgtgctgcgcggt
ctggagcgcctcctgctctcagagcagttgtcacgtgtggacggagaagcgctggtcaaa
ctcagcgtggacagagtcaacatgccgtcgccacacagagccatggctgccctgggcctc
atgctcacctgcatgtacactgcggtgcttgcgtcgggttcagacgtgacaggggttaga
ggtcaggttgactctggctctgccgtagcagaggcggtgggcgtcacggcaggtcatgtt
ggtttctcctcaggcaaggagaaagccagccctgccggtcgccccgcccactctgaccct
caggccccagacagcgagtcgatcattgttgccatggagagggtctctgtgctctttgac
aggatccggaaaggtttacctagtgaagctcgggtggtgtccaggattctgccccagttt
ctggacgacttcttcccgccgcaggacgtcatgaacaaggtcatcggagagttcctgtcc
aatctgcaaccctacccacaattcatggccactgtcgtctacaaggtttttcagacactt
catgcaacaggccagtcttctatggtgcgagactgggtgctgctgtccttgtccaacttc
actcagcggacaccagtggccatggccatgtggagcctctcctgtttctttgtctctgcg
tccacctcccagtggatctcagccctactgccacacgtgatcagccggatgggctctagt
gaggtggtggacgtcaacctgttctgtctggtggccatggacttctaccggcaccagatt
gacgaggagctggaccgcagggccttccagtccgtctttgagactgtggcctcaccaggc
agcccttattaccagctgctgggctgtctgcagtcaatccaccaggatacatcactctga
DBGET
integrated database retrieval system
