Sander lucioperca (pikeperch): 116039572
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Entry
116039572 CDS
T07345
Name
(RefSeq) collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
116039572
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Gene cluster
GFIT
Motif
Pfam:
Collagen
MAGSP
Motif
Other DBs
NCBI-GeneID:
116039572
NCBI-ProteinID:
XP_035856618
LinkDB
All DBs
Position
4:5696624..5736566
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AA seq
1547 aa
AA seq
DB search
MDNLITASTVSSGGGVGGSSRGDRSLSAGGSGERAASGGTNSSVLFTSSSSHTSGPHGSG
ASKGPGGFGITTRGGSSAVSSGGGSSAASGGSGAGFSAAGGGSSSVSSGFGSGGREGIRE
GLGAVTVSTVAKTSYSSGGSRAAKKGSSSAVTYSPGPKERKGLITMASALSDAFDESSST
NSSPEYTRKEYGTSSASSSSANRGRSQSRESQIRARLQSASPTARWTELDDVKRLLRGNH
SISTSPPQSPNNTLPIPRKASVETRSMSESSSTEHYGSVWSGGVSSSYSYNTNPNNLSTS
STLYPSGVQNNLALSSPSANSGLYASSTVPVYGVQNNLASTSPMVLSPTGSNTQIVYGVQ
KNVSGPGLSTTTVRPSSPIYDETPGKDFKFVLIEKENAPVKKETERLVMTKDTGKQFMSA
APASASYSGDSLTREKQKLSSSTMEEGTDAKSASLKVATKDKATYAEIGKDDSGFSFCSC
CSWWKWLLGLLLSLLLLLGLLFGLIALGEEVKRLRSRVDALEAISGATSARSSRLSASSG
INIIDPLDSSYIDRSASGSTLTRSDNSINLGAAGPEQDSAVLQRAVQQLVRAELRSDAVR
DTLAYSLKGERGDPGPKGDPGLLGQKGDGGFPGLPGPMGHPGLEGPRGPKGSAGEPGSEG
PPGQRGRDGSMGPRGEAGPPGFAEKGDKGSQGEAGRPGPAGAAGPMGPKGAMGEQGASGS
PGAPGPKGFQGEAGAPGEKGDRGTPGLAGTKGDQGERGPRGPGGEPGQPGPQGPAGPKGS
KGAAGDTGSMGLPGVRGPPGLPGDVGPTGEPGSPGKIVAPVGSNTVTIPGPPGPAGPPGP
AGTHGLSGPVGPAGVPGQPGPKGDRGEKGEKGEQGKPGEPGSSDTVSATQTVAGPPGPPG
TPGAPGPQGPPGETKQGPPGHKDPAGEPGIGSPGPPGKKGEPGSFVPTSETFFAGPPGPP
GPPGPKGSAGEQGIQGYQGEPGQPGLPGSPGEEGLGFPGQPGPRGPQGPPGPEGPEGPEG
PQGPKGDTGVPGAPGIPGVSIGGSYSPGAPGPPGPPGPPGRDGSGSGSTVVGQYMAEYLQ
SDGIRQYLAGPPGPPGAPGPAGDGLVDDVANRVIAYIQSTGRGYDGTPGPPGPPGPPGSI
SVNDLINILQQEDVRRYIAGTPGPPGPPGAPGLSNYILNTQEVAERVLTLMNERGAVGVP
GPPGPPGPPGNLLTTGYQALVGPQGPPGSPGIPGPQGTPGPAGPPGPPGFVNFYGAPPDQ
INQLVSYVEHASRETLKAEPQQYFKSDSVRGAVFGLPGTPGPPGPPGHKGEPGVPGARHY
NLDTEEFSSMAVKVTDYIKSHGLLRDLVRDSERLVQGPPGPPGLPGMPGHSQWVSSRENV
VDVVEYIKSRGVLHDIVGEYNSRVFQGPPGPPGPAGPPGYSRWFGSHENATDLLEYIKSH
GLLRDFERNHNERSIQGPPGPPGPPGPPGYSRLFGSHANVTDLVEYIKTHGAIIGPPGRP
GQKGEMGFPGPKGERGEQGLPRLEGPQGHKGEFSLLTKRRRRRGVGV
NT seq
4644 nt
NT seq
+upstream
nt +downstream
nt
atggacaacctaattacagcctcgactgtcagctctggtggaggtgttggaggaagtagc
agaggtgaccgttctctgagcgcaggagggtcaggtgagcgagctgcatcaggcggcaca
aacagctcagttctgttcacatccagcagctcccacacctccggcccccatggatcagga
gccagcaagggccccggaggcttcggcatcactactcgtgggggctcctctgctgtatcc
tcaggtggagggagttcagcagcttcagggggatcaggggcggggtttagcgctgctgga
ggggggtcctctagcgtgtcctctggttttgggagtggtggcagagaaggaataagggaa
gggctaggcgctgtgacagtttcaacagtggcgaagaccagctacagttcaggaggatct
agggcagcgaagaaaggatcgtcctcagcagtcacttattcccccggtccaaaagagagg
aagggcctgatcaccatggcatcagctctctcagatgcctttgacgaaagttcaagcaca
aactcctctcccgagtacaccaggaaggagtacggtacttcaagtgcatcttcaagttct
gccaacagagggagaagtcagagtagagagagtcagatcagagccaggcttcagagtgct
tctcctacagcaagatggacggagctggatgacgtgaaacgtctgctgagaggaaaccac
tccatcagcaccagccccccccagtcccccaacaacacgctgcccatccccaggaaggcc
agcgtggaaaccaggagcatgtctgagagctccagcacagagcactatggcagcgtttgg
tccggaggtgtgagcagtagctacagttacaataccaaccccaacaacctgtccacttcc
tccaccctatacccatcaggagttcagaacaacctggcactcagctctccctctgcaaac
agtggactatatgccagcagcactgttcctgtgtatggtgttcagaataacctggccagt
accagcccaatggtcctctctcccactggatccaacacacaaatagtgtatggtgtgcag
aaaaatgtgtctgggcctggactcagcacaaccacagtgagacccagcagccccatttat
gacgagacgcctggcaaagactttaagtttgtgctgatagagaaggagaatgctcctgtc
aagaaggagacagagcggctggtcatgaccaaagacacagggaagcagttcatgtctgct
gcacctgcttcagcttcctactctggggactcactaacgagagagaaacagaagctctca
tccagcacaatggaagagggaacagatgctaaatctgcaagcctaaaagttgccacaaaa
gacaaagccacctacgcagagatcggtaaagatgactcaggctttagcttctgctcctgc
tgcagctggtggaagtggctgctgggcctcctgctcagcctgctcctcctcctcggcctc
ctctttggactcatcgctttgggtgaagaagtgaaacgcctcaggagccgtgttgatgct
ctggaagccattagtggcgctacgtcagccaggtccagccgcctgtcggcctcctctggc
atcaacatcatcgacccactggactcgtcatacatcgacaggagtgcctctgggtcgacc
ctgacccgctctgacaacagcatcaacctgggggctgctgggccggaacaggacagcgcc
gttctgcagagagccgttcagcagctggtcagggctgaactccgctcggatgctgttaga
gatacacttgcatactcactaaaaggggagagaggagatccaggacctaaaggggatcca
gggctgctaggacaaaaaggtgatggcggctttcctggcctaccaggccctatgggtcac
ccaggattggaaggaccaaggggacccaagggaagtgcaggtgagccaggttctgaggga
cccccaggccagaggggccgggacggatcgatgggcccccgcggagaggctggaccgcca
ggtttcgcagagaaaggagacaaaggatctcaaggcgaggcaggacgtcccggtcctgct
ggtgctgctggaccgatggggccgaaaggtgccatgggagagcaaggtgcctcaggaagc
cctggtgctccaggtccaaagggtttccagggtgaagcaggagcacccggagaaaaaggc
gatcgaggaacaccagggctggcaggaactaagggggatcagggagagaggggaccacgt
ggaccaggaggtgaaccgggacaacctggaccacagggccctgctggaccaaagggttct
aaaggagctgcaggtgacacgggttcgatgggacttcctggcgtgagaggaccacctgga
cttcctggagatgttggtcccacaggtgaaccaggatcgcctggtaaaatcgtcgctcca
gttggctccaatactgtgaccattcccggaccaccagggcctgctgggcctccaggtcct
gctggaacccatggtctgtctggtcctgttggccctgctggtgtcccaggacaacctgga
cctaaaggagaccgaggagagaaaggagaaaagggagagcaaggaaaacctggcgagcct
ggtagttcagatactgtcagtgccacccaaaccgtggctggaccgcctggcccaccagga
actcctggagcacctggtcctcaaggtcctcctggtgagactaaacagggtcctccagga
cacaaagatcctgcaggagagccaggaattggttcacctggacctccaggaaagaaagga
gagcctggcagctttgtgcctacctcagaaaccttttttgctggaccaccaggaccccca
ggacccccaggcccgaagggttcagcaggtgaacaaggaatacaaggataccaaggtgaa
ccaggtcaaccaggtcttccagggagtccaggggaagagggtcttggtttcccaggtcag
cctgggcctagggggcctcagggtcctccaggcccagaggggccagaggggccagagggg
ccacaaggacctaaaggcgatacaggagtcccaggggccccaggaatccctggggtctcc
attggtggctcatacagtcctggtgccccgggcccacctggaccacctggaccacctgga
agagatggaagtgggtctggatccactgtagtgggccagtacatggcagagtaccttcag
agtgacggcatcaggcagtacctggctggacctcctgggcctccaggggccccaggaccc
gcaggggatgggctggtggatgatgtggccaaccgagtcatcgcctacatccagagtaca
gggagaggatatgacgggactcctggcccccctggccctccaggtccacctggctccatc
tctgtcaacgaccttatcaacatattacaacaggaggatgtgaggagatacattgcgggt
actcccggtccaccaggacctcctggagctccaggcctcagcaactacatattaaacacc
caggaggtggctgaacgtgtcctcaccctcatgaatgagaggggggcggtaggtgtccct
ggacctcctggacctcctgggcctcctggaaacctgttaacaactgggtaccaagcactt
gtgggtcctcaggggcctcctggttccccaggtatccctggtccacaaggtacacctgga
cctgcgggtccacctggcccaccaggatttgtgaacttttacggggccccccctgatcaa
atcaaccaactggtttcctatgtggagcatgccagcagagagacgctcaaagcagaacca
caacaatatttcaagagtgacagtgtaagaggagctgtgttcggacttcctggtacgcca
ggccctcctggacccccaggacacaagggagagccaggtgtacccggtgccagacactac
aatctggataccgaagaattctccagtatggctgtaaaagtaactgattacattaaatcc
catggcttgctccgtgatcttgtgagagactctgaacgtctcgttcaaggacctccagga
cctcctggacttccaggaatgcctggacacagccaatgggttagttcccgtgaaaatgtc
gtggatgtggtggaatacatcaaatcgcgcggtgtgctgcatgacatcgtgggtgaatac
aacagtcgtgtctttcaaggacctccgggaccgcccggccctgcaggtccccctggatac
agccggtggtttggttcccatgaaaatgccacagatctgttggaatacataaaatctcat
ggtctgctacgtgactttgaacggaaccacaatgaacgctccatccaaggaccaccggga
ccacctggccctccaggtccccccggatacagcagattgtttggttcccatgcaaatgtc
actgatttagtggaatacatcaaaacacatggagccattataggaccgcctgggagacca
ggacagaaaggggaaatgggattcccggggccaaaaggagagagaggtgaacaagggctt
ccaaggctagaaggaccccaaggacacaaaggagaattctctctgctgactaaaaggagg
aggaggaggggcgttggtgtataa
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