Sander lucioperca (pikeperch): 116039881
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Entry
116039881 CDS
T07345
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116039881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sluc03041
]
116039881
03009 Ribosome biogenesis [BR:
sluc03009
]
116039881
Enzymes [BR:
sluc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116039881
Spliceosome [BR:
sluc03041
]
Complex A
U2 snRNP components
U2 related factors
116039881
Complex B
116039881
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
116039881
Ribosome biogenesis [BR:
sluc03009
]
Eukaryotic type
90S particles
Helicases
116039881
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SRP54
Flavi_DEAD
AAA_29
nSTAND3
Motif
Other DBs
NCBI-GeneID:
116039881
NCBI-ProteinID:
XP_031140837
Ensembl:
ENSSLUG00000023363
LinkDB
All DBs
Position
17:complement(24637358..24666707)
Genome browser
AA seq
758 aa
AA seq
DB search
MFKRHRLDLGDDSPSKKRPSDERDRDRDRDREERSRDRDRDRDRDRDGDRDVKSSVVPNS
LAAGSGGFLKQTPIQQPINPFTNLPHTPRYHEIMKKRLQLPVWEYRERFTDILMCNQSFV
LVGETGSGKTTQIPQWCVDMVRSMPGPKRAVACTQPRRVAAMSVAQRVADEMDVMLGQEV
GYSIRFEDCSSPKTLLKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLK
EVVRQRADLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIR
TVIQIHMCEVDEGDLLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQ
QRIFEPPPPNKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLL
VTAISKASAQQRAGRAGRTCPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKL
GIDDLVHFDFMDPPAPETLMRALELLNYLAALNDGGDLTELGSMMAEFPLDPQLAKMVIA
SCEFNCSNEILSITAMLSVPQCFVRPTEAKKVADESKMRFAHIDGDHMTLLNVYHAFKQN
HDSTQWCYENFVNYRSLMSADNVRQQLSRIMDRFNLPRKSTEFSNRDYYTNIRRALVTGF
FMQIAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEW
LVKVAPQYYEMGNFPQCEAKRQLERIIAKISSKEYTQY
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgttcaagcgacatcgtttagatttgggtgatgattcgccgagtaaaaagagaccctct
gatgagcgtgaccgtgacagggacagagaccgtgaagaacggtcgagggacagggaccgt
gatcgggatcgagaccgtgacggggacagagatgtgaagtcatccgtggtgcccaacagc
ctagctgcaggcagtggaggcttccttaagcaaacccccattcagcagccgatcaacccc
ttcaccaacctgccccacacgccacgctaccatgagatcatgaagaagcggctgcagctg
cctgtctgggagtacagagagcgcttcactgacatcctgatgtgtaaccagtcttttgtg
ctggtgggagagacaggctctggaaaaaccacccagatccctcagtggtgtgtggacatg
gtgcggtcaatgccgggaccaaagagagcagtggcctgcacccagcccaggagggtagcg
gccatgagcgtcgcccagagggttgctgacgagatggatgtcatgctgggccaagaggtg
ggctactccatcaggtttgaggactgcagctctcccaagaccctactcaagtacatgaca
gatggaatgttgctgcgggaggctatgaatgatcctctgctggagcgctatggtgtcatc
atcttggacgaggcacacgaacgcactttagctacagatatcctcatgggggtcctcaag
gaggtggtccgccagagggctgacctcaaggtcatcgtcatgagtgccacgctcgatgcc
ggaaagttccaggtgtactttgacaactgcccactgctaaccatccccggacgcacccac
cctgtggagattttctacacgccggaacctgagcgggactacctggaggcggccatccgc
actgtgatccagatccacatgtgtgaggtggatgaaggggaccttctgctcttcctcact
ggacaagaggaaattgatgaagcctgcaagcgaatcaagagggaggtcgacgacctgggg
ccggaagtcggtgatatcaagatcatcccgctttactccacgctgcctccacagcagcag
cagaggatctttgagccacccccacccaataaaccaagtggcgccatcggaaggaaggtt
gtcgtgtcaacaaacatcgccgagacatccctgaccatcgatggcgtggtgtttgtaatt
gatcccggatttgccaagcaaaaggtatataacccacgtatcagagtggaatcccttttg
gttacagccatcagcaaggcctcggcccagcagagggcaggtcgtgctgggcggacatgc
ccagggaagtgtttccgcctttacacagagaaagcttacaagacagaaatgcaggacaac
acgtatccagagattctgaggtctaatctgggctctgtggtgctgcagctgaagaaactg
ggtattgatgacctggtgcactttgacttcatggacccaccagccccagagaccctgatg
cgagccctggagttgttgaactacctggcagcgctcaatgacggcggtgacctgacggag
ctgggctccatgatggcagagttccccctggacccccagctggccaagatggtcatcgcc
agctgtgaattcaactgttcaaacgagatcctgtccatcactgccatgttgtcagtccca
cagtgcttcgtccgacccacggaggctaagaaggtggccgacgagtccaagatgcgcttt
gcccacatcgacggagaccacatgacgctgctcaacgtctaccacgcctttaaacaaaac
cacgactctactcagtggtgctatgaaaatttcgtcaactaccgctcgctgatgtcagca
gacaacgtacggcaacagttgtccaggatcatggaccgcttcaacctgccgcggaagagc
actgagttcagcaatagagactactacaccaacatccgccgtgcgctggtcactggcttc
ttcatgcagatcgctcacctggagcgcacaggccattacctgacggtgaaggacaaccaa
gtcgtacagctgcacccatccactgtgctggaccacaagccggagtgggtgctttacaat
gagtttgtgctgactaccaagaattacatccgcacatgcactgacatcaaaccagagtgg
ctggtgaaagttgccccgcagtactatgagatgggtaacttcccccagtgtgaagcgaag
agacagttggagcgtatcattgcaaaaatctcatctaaggaatacactcagtactaa
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integrated database retrieval system
