Sander lucioperca (pikeperch): 116039909
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Entry
116039909 CDS
T07345
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X11
KO
K24356
collagen type XXV alpha
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sluc00536
]
116039909
Glycosaminoglycan binding proteins [BR:
sluc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116039909
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
116039909
NCBI-ProteinID:
XP_031140906
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Position
17:complement(24810727..24962786)
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AA seq
687 aa
AA seq
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MEIAEARGASKCVEKMEKEVAPQKRQHCGTTVLNIISSLCSVASIAFCILLSINTADLKN
RVVDLESGNDEHTLIRAPGYSMDHFNSLIEQRVDELLSQRSYEHFVKIRTARQAGPECSC
PPGPPGKRGRRGRNGDPGPPGPPGPKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRL
IKGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGVPGLAGDPGQPGEPGIMGPEGPQG
HKGSLGPPGIPGVDGLKGDVGIPGLDGVPGAKGETGERGEKGDMGEDGPKGDIGEKGDAG
STAAGIKGEPGEPGRSGLKGEPGLPGLPGLPGIKGEPGFFGPQGEPGLPGLPGTKGERGD
HGPQGKGERGELGPVGPKGSQGEAGTPGLKGSKGETGDKGEQGSFGPKGPPGQKGDQGAT
EIIDYNGNIQEALQKITTITVTGPPGPIGPMGPEGLKGDRGMPGLPGLDGERGYKGSKGD
MGMPGASGEKGATGLTGLPGVNGVKGDKGDTGLPGPQGSSIVGTPGPPGPHGLPGPMGPH
GFPGPKGEPGLHGVKGIRGEPGHKGDRGPLGLPGASGLDGKPGIRGTDGPTGPAGPAGPK
GDIGERGAPGEPGPRGPYGLPGSAGTPGLDGLPGLRGEKGDVGERGEKGFRGFKGEKGEP
GQPGLDGLDAPCQLGPDGLPMPGCWQK
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgcggaggcaagaggagcatctaagtgcgtggaaaaaatggagaaagaagtg
gcgcctcagaagcgacaacattgcggcacaacagtgctgaacattatctcgtctttgtgc
tcagtggcgtccatcgccttttgcattcttctgagcattaacacagctgatttgaagaac
cgggttgtggatttggagagtgggaatgacgagcacaccttgatccgagcccctggctac
tccatggatcattttaattcattgattgagcaaagagtggatgagctcctctcacagcgc
tcctatgaacattttgtcaagattcggactgccagacaagcaggacctgaatgcagctgc
cctccaggacctccaggaaagcgaggaagaagaggccgcaatggagaccctggacctcct
ggccctccaggtcccaagggtgaaaagggggatcaaggcgaccagggaccacggatggtc
ttccctaagatcaatcatggctttctttctgctgaccagcagctcataaagcggcggctc
attaagggagatcaagggcaagctggaccacctgggcctccggggccaccgggccctcct
gggccaagggggcctccaggggacacagggaaagatgggcccagaggtgtacctggtcta
gcaggggatccagggcagcctggagaaccaggaatcatgggacctgaggggccacaaggg
cacaagggttcactcgggcctcctggcatcccaggtgttgatggactgaagggggatgtt
ggcatcccaggattggacggtgtccccggagccaagggtgaaacaggagagcgaggtgaa
aagggcgatatgggtgaagacggacctaaaggtgatataggagagaagggagatgcaggc
tccactgcagcaggcatcaagggcgaacctggagagcctggacgaagtggattaaaggga
gagccaggacttccagggctgcctggacttccagggataaagggtgagcctggattcttc
gggccccagggagagccagggcttccaggactcccaggaactaagggtgagagaggcgac
cacgggccacaaggaaaaggcgaaagaggagaacttggacccgttggaccaaagggttca
caaggagaggctggtacacctggtcttaaagggtcaaagggggagactggagacaaaggg
gagcagggatcttttggcccgaaggggccccctgggcaaaaaggagaccaaggagccact
gaaatcatcgactacaatggaaatattcaggaggctttacagaagattaccactattaca
gtaacgggtcctcctggacctattgggccgatgggacccgagggtttgaagggggatcgt
ggtatgcctggtctccctggactcgatggtgaaagaggctacaaaggttccaaaggtgac
atgggaatgcctggagcctcaggggagaaaggagcaactggtttaactggcctacccggt
gtcaatggggtaaaaggggataagggagatacaggtctacctggccctcaaggttcttca
atcgtcggcactccagggccaccagggccccatggactcccaggacccatgggcccccat
ggtttccctggaccaaagggggaacctggtttgcatggtgtgaagggtatccgaggggaa
ccaggacacaaaggggaccgtggaccactgggtctccccggagcctccggcttggacggc
aagcctggaattaggggcacggatgggcctacgggtccagctggtccagctgggccgaag
ggtgacataggtgagagaggagcacccggcgagccaggaccaaggggaccttatggactg
cctggatctgctggaactccaggcttggatgggttgccaggcttaaggggagagaaaggc
gacgttggggaaagaggagaaaagggtttccggggatttaagggtgaaaagggggaacca
gggcagccaggtctggacgggctggatgccccatgccaattgggcccagatggattacca
atgcctggatgctggcagaagtga
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