Sander lucioperca (pikeperch): 116040037
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Entry
116040037 CDS
T07345
Symbol
lsm5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03018
RNA degradation
sluc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116040037 (lsm5)
09123 Folding, sorting and degradation
03018 RNA degradation
116040037 (lsm5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116040037 (lsm5)
03041 Spliceosome [BR:
sluc03041
]
116040037 (lsm5)
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116040037 (lsm5)
mRNA degradation factors
5'-3' decay
Lsm complex
116040037 (lsm5)
Spliceosome [BR:
sluc03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
116040037 (lsm5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
116040037
NCBI-ProteinID:
XP_031141130
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All DBs
Position
23:10858689..10863445
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AA seq
93 aa
AA seq
DB search
MNMAATPVTNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFE
ITPEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgaacatggcggctactccagtaacaaatccgtcacagctgcttccacttgagcttgtg
gacaaatgtatcggctcccgaattcacatcgtcatgaaaacggataaagaaatcgtcggc
accctgctgggttttgacgactttgtcaacatggtcctggaagatgtgacagaatttgaa
atcacaccagagggacggaggataaccaaactggaccaaatccttctcaacggcaataac
atcaccatgctcattcctggaggagaaggtcctgaagtatga
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