Sander lucioperca (pikeperch): 116040548
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Entry
116040548 CDS
T07345
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03030
DNA replication
sluc03410
Base excision repair
sluc03420
Nucleotide excision repair
sluc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116040548 (rfc1)
03410 Base excision repair
116040548 (rfc1)
03420 Nucleotide excision repair
116040548 (rfc1)
03430 Mismatch repair
116040548 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sluc03032
]
116040548 (rfc1)
03400 DNA repair and recombination proteins [BR:
sluc03400
]
116040548 (rfc1)
DNA replication proteins [BR:
sluc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
116040548 (rfc1)
DNA repair and recombination proteins [BR:
sluc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
116040548 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_5
Rad17
AAA_30
RuvB_N
AAA_17
AAA_33
AAA_14
AAA_7
BRCT_2
AAA_18
AAA_16
nSTAND3
RNA_helicase
NTPase_1
AAA_19
Motif
Other DBs
NCBI-GeneID:
116040548
NCBI-ProteinID:
XP_031141871
Ensembl:
ENSSLUG00000021235
LinkDB
All DBs
Position
4:complement(26264756..26278094)
Genome browser
AA seq
1190 aa
AA seq
DB search
MDIRRFFAPTSAKPSVQKPVPNGNIKTEEKKEEKKKKKKKNSSSSNEEVKKKETAKVKSS
KPKETRKDSEKKRKKHAVIESDSEDEEPVRKSKKSPKEKQKTSQTVPPPKKDPVQYVSET
DSDSDNFQSLKKVSEPKQNGTAKQTKSDAGSARPGVKEGLKSPVKPSSTQGKPAVKSPPV
PVTPKSAPPPPLKRTPTSVLDYFGSATVQRSDKKLVASTKRKAPTQDTDDLMSDEQIAKQ
LQMDEDMELEKQVHEDEEFARTLAMLDEEPQAKKARKGSDEKSAATACPKKSRTDSAAGI
TSSPSKSNRRGSMSEDVISPSPKKNPVPVKASSKLAMMKKKEEEREERPKSKTPISPTKI
KLSPKSEPLPLSNSNKRFTPKTGTTPTTVKTSPKKPESTSTSPDDSEKKKVNSAAYRNFL
NRDGPRALGSKEIPQGEENCLEGCVFVLTGVMESMERDDAKSLIERYGGKVTGNISKKTT
YLVQGRDSGVSKLEKAESLGTKILDEDGLLELIRTKPGKKSKYEIAAEAESKASKTRTPP
SKTLKSTPKAQKISPSKGNSRSPHTPSPSKTGLAQGHGARTRDGCTPPGRGSGHTARREL
GLSPSTSSSSAPGPSPTHEDASLLWVDKYRPRSLKTVIGQQGDQSCANKLLRWLQNWYRH
HSGGSSKPAVARFGKFGGKDDGSGFKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASC
TRSKNSLKEVVSESLNNTSIESFYKGTSQKVSSKHVLIMDEVDGMAGNEDRGGIQEMIGL
IRSSKIPIICMCNDRNHQKIRSLANYCFDLRFQRPRVEQIKGAMMSLAFKEGIKIPPPAL
NEMILASNQDVRQVIHNLSMWSAKNKVMTYDQCKSDAASARKDMKLGPFDVCRKVFASGE
ETAHMSLIDKSDLFFHDYSLAPLFVQENYPHVRPKAAGGNLKSHLMLLSKTADSISDGDL
VDRQIRSRQIWSLLPTQAIYASVLPGELMKGYMSQFPNFPSWLGKNSSTSKHSRIVQELA
SHMCLKTMSSRQAVNLDYLYYLRQALLSPLQRHGAEGAGEAVQLLDNYQLIKEDVDSIME
ISVWGGQPDPYSKLDSKVKAAFTRAYNKEAHLTPYSLQAVKKGRRGGGGESEFGGEDMDN
EVQESEDEGLKTDAMIKQKKAKATKESKKEKKEDSGKGKGKGTGKGKAKK
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttgcaccgacttcagccaagccttcagtgcagaaaccagtt
ccaaatggaaacatcaaaacagaggagaagaaggaggagaagaagaagaagaagaagaag
aattcctcctcatcaaacgaggaagtgaaaaagaaagagaccgccaaggtgaaaagctcc
aaaccaaaggagacacgcaaagatagtgagaaaaaacgaaagaagcatgcagtcatagaa
tcagactctgaggatgaggagccagtaaggaagtcaaaaaaatccccaaaagagaaacag
aagacgagccaaactgtgccacctcccaaaaaagatcctgtgcagtatgtctctgaaaca
gactcagacagcgacaactttcagtccttaaagaaggtgtctgaacctaagcagaatggc
acggccaaacagacaaagtcagatgcaggaagtgctcgtccaggagtcaaagaggggctg
aagtctcctgtcaagccctcctccacacaggggaaacctgcggtgaagtctcctcctgtg
cccgtcacccctaaatcggccccgcctcctccgctcaaacgaacccccacttcagtactc
gactacttcggcagtgcgactgttcagcgctcggacaagaagctcgtagccagcaccaag
cgaaaggctccgactcaggacacggatgatctcatgagtgatgagcaaatcgccaaacag
ctgcagatggacgaggacatggagctggaaaagcaggtccatgaggacgaggagtttgct
agaactctggccatgctggacgaggagcctcaagcaaagaaggctcgtaaaggctccgat
gaaaaatcagccgcgaccgcgtgtcccaaaaagagccgtaccgactctgctgctggcatc
acaagcagcccgtcaaagagcaaccgaaggggcagcatgtcagaagacgtgattagtccg
tctcctaagaagaaccccgtccccgtcaaagccagctccaaactggccatgatgaagaaa
aaggaagaagagagagaagaaaggccaaagagtaaaacaccaatttcgcccacaaaaata
aaactctctcccaaaagcgagcccctccctttgtcaaactcaaacaagaggtttactccc
aagacaggaaccacgcccaccacagtaaaaacttctcccaagaaaccagagagcacgagt
acgagtcctgatgattcagagaagaagaaggtcaactctgcagcttataggaacttcctg
aaccgcgatggaccacgagctctcggctccaaggaaatcccacagggtgaagagaactgt
ttggagggctgtgtgtttgtgctgacgggggtcatggagtccatggagagggatgatgcc
aaatccctcatcgagcgctacggaggcaaggtgacgggcaacatcagcaagaagaccacc
tacctggtgcagggcagagacagcggagtctcgaagctcgagaaggcggagagtctcggt
accaagatcctggatgaggatggtctgttggagctgatcagaaccaaaccaggaaagaag
tccaagtacgagatcgctgcagaggctgagagcaaagcctcaaagaccaggactcccccc
agcaaaacattaaaaagcacccccaaagcccagaagatctctccctccaaggggaattcc
aggtcccctcacaccccgagcccgtctaagaccggcttggcccaaggccacggtgccagg
accagagatggctgcactccacctgggagaggctcaggccacacagcccggagggagctg
ggcctttccccctccacttcttcatcttcagccccaggaccatcaccgacacatgaggac
gccagtctgctgtgggtggacaagtaccgcccacgctctctgaagactgtgattggtcaa
cagggggatcagagctgtgccaataagctgctccgctggctgcagaactggtacagacac
cacagcgggggctcttccaagccagcagtagcaaggtttggtaagtttggaggaaaagat
gatggatctggattcaaagctgctctgctctccggacctccgggcgtgggtaagaccacc
acagctgccctggtctgtgaggaattgggcttcagctacgtggagatgaacgccagctgt
actcgcagcaaaaacagtctgaaggaagtcgtctcagagtcacttaacaacaccagcatt
gagagcttctacaaaggcacgtctcagaaagtgagcagtaaacacgtcctgatcatggat
gaggttgatggcatggctggcaacgaggaccgtggaggaatccaggagatgatcggcctg
atcagaagttcaaagattcccatcatctgcatgtgcaacgatcgtaaccaccagaagatc
aggtcactggccaactactgctttgatttgcgcttccagaggccgcgagtggaacagatc
aagggagcaatgatgtccctcgctttcaaggagggaatcaagatcccccccccagctctt
aatgaaatgatcctagcctccaatcaggatgtccgacaggtgatccacaacctgagcatg
tggtcggccaaaaacaaggtgatgacgtacgaccagtgtaagtctgacgcagccagcgct
cgcaaagacatgaaactgggtccgtttgacgtctgtaggaaggtatttgcctcaggggag
gagactgcccacatgagcctcatcgacaagtctgacctcttcttccacgactactcgcta
gcgccgctctttgtccaagagaactacccgcatgttcgaccaaaggctgcaggtggcaac
ctgaagtctcacctgatgttgctcagcaagacagcggactccatctctgacggcgacctg
gtggaccgacagatccgctctcggcagatctggtcactcttgcccacacaggccatctat
gccagtgtgctaccaggggagctcatgaaaggctacatgagtcagttccccaacttcccc
agctggctcggcaagaactcctccaccagcaaacattcccgcatcgtccaggagctggcc
tcacacatgtgtttaaagacgatgagcagcagacaggcggtgaacctggactacctgtac
tacctgcggcaggcactgctgagcccgcttcagaggcacggagcggagggcgctggcgaa
gctgtgcagctgctggacaactaccagctcatcaaggaggacgtggacagcatcatggag
atcagcgtctggggcggacaaccggacccttactccaaactggactccaaggtgaaggca
gcattcacacgggcctacaacaaagaagctcacctgacaccatactctctgcaagcagtg
aagaagggccgccgcggtggcgggggggagtcggagttcggaggagaggacatggacaat
gaagtgcaggagtctgaagacgagggcctcaaaaccgacgccatgatcaaacagaagaag
gccaaagccaccaaggagtcaaagaaagagaagaaggaagattctggaaagggaaagggt
aaggggacaggcaaaggcaaagccaagaaatga
DBGET
integrated database retrieval system
