Sander lucioperca (pikeperch): 116040645
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Entry
116040645 CDS
T07345
Name
(RefSeq) collagen alpha-1(XX) chain isoform X3
KO
K24357
collagen type XX alpha
Organism
sluc
Sander lucioperca (pikeperch)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
VWA_2
FN3_Tor_3rd
DUF4959
Motif
Other DBs
NCBI-GeneID:
116040645
NCBI-ProteinID:
XP_031142013
LinkDB
All DBs
Position
12:16201215..16244361
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AA seq
1586 aa
AA seq
DB search
MSPHLLPSSSSSSSSSSSFWLMLCFLLGVFLLLSSGVHGQGRLKLTVLSEDRLQMKWKEA
DGPVQGYKVRVRPISEVPQPELMLTTTRGRATVAGLDSSQEYALQVLVLNGTTERLLAKR
RFTMEGLREEEMIRSGSREQRKKVFPGGSGSGDLDDVTEALLGVPTILYPDPTTTAAATT
ETPAIETPSQLPDEAPEKNTKEKRKRKKERDRSKVENKEEQGTTQGKAAEEKPQKTPFLT
QPVTGMSPRKPFECDSDAAADIMLLVDGSWSIGRTNFRRVRDFLEGLMTPFHIGPDHIQI
GLTQYSGDPRTEWQLNNFTTKDQLLEAVRNFRYKGGNTFTGQALLHVMEENMRAKAGARS
DTPFFLVLLTDGKSQDDAIAAANRLKNAGVEIIAVGVKNADEAELRQVASEPVDLNVYNV
NDFPLLSKLVARLVHILCGRIEDRGISKRMEPGPTADPALSYPSPTDLRFSELGSREVKL
HWTNPSKPVQQYRVVYHSAEGQSPQEVVLAGSESTVLLEGLSSQTLYHVSIFPVYEDNVG
LALRGTVTTLPLAMPANLEVTPASYSTLRVRWGAAPGATQYMVLYSALNHGEPDDAKEEK
FSADQTMVELAGLLPATDYSVTLYALYDEDPSDPVTAVATTFPLPQPMSVHFPVVTHSML
RVSWVPGAVDIPSHRITYSTNHGSDVKQVEVTGLISVVVQNLSSLSRYLVSVQSLYPQGL
SAALTSNVTTLKVPSPSDLRVTNFSGSDITVRWEAAADDVVSYLIKWISLSGGDLRQLRV
SGESEGAILEGVEDDKEYQISLSALYRDGAQSEAVATRYSTLSGGGPASISVSEETAVSL
VVSWVPPNAHVLQYRVSYTALTAAETQDSTVVVPGGEKQVVLKSLQPDTRYSILVTAEYR
NREGGSGSAQGKTTSLRVSSVSVVRSDHSSICVSWRPVSTVDGYRIVIQSVKDKQTKEET
VDESSSSHCFTDLEPETLYRISVHSLLSSAEGAAVSILHPTATVPARIPIHPRIYPIHNE
VCPEVTIRNSIVKGFDMMEAFGLTKNAHSSVEGVAAEPFVFNTLPTFTLYRDVQLTQSTK
FIHPAGFSPEHTISITFRVLQETPREPFALWQLTDNDFQPKMGVVLDPNTKHLVYFSLDY
RGEVQELTFDQSQVYRLFYGSFHKVHLSVSQVSVSLSVDCQRVGERPARPLGNLPTDGFE
MLGKLVKTRGPNSGSAPFQLQSFEIVCNTTWALEDTCCDLPGVRDEESCPAPAYTCTCSS
DIPGAPGSPGPTGKPGPRGEKGDKGDQGQKGEVGPPGKPGFEGGLGPLGSTGPRGMAVQG
KVGPPGPRGERGDPGRPGVQGLPGPPGPKGEEGIPGPKGIRGLEGNIGGPGLTGPRGFQG
MPGHPGPIGERGYSGPVGPTGLPGGKGERGEKGEPQSMAMIYKLVTQACEQLVHKEVLKL
DMFINEISRKPAPIEEPVAPPGEPGIPGPKGPPGARGTQGHVGPRGRPGKPGYPGEQGRR
GMPGGKGDAGPNVQGPTGIKGFAGPPGESKLGIPGPKGEDGKAGPAGITGPPGQPGEIGP
PGVCDSSGGCHRVPQQTEDPYYGYQP
NT seq
4761 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctcacctccttccttcatcatcatcatcatcatcatcatcatcatctttctgg
ctaatgctgtgtttcctgctaggtgttttcctcctgctgtcctcaggggtccatggccaa
ggtcgtctcaagctgacggtcctgtctgaggacagactgcagatgaaatggaaggaggct
gacggacccgttcagggctacaaggtccgagtgagacccatctcagaggtgccacagcca
gagctgatgctgaccaccacacggggccgggcaacggtggcaggactggactccagtcag
gaatacgccctccaagtcctcgtgctcaacgggacgacagaaagacttttggcaaagcga
cgattcaccatggagggtctgcgagaagaggaaatgatccgcagtggtagtcgagagcag
agaaagaaggtgtttccaggcggatcagggtcaggagacctggacgatgtaacggaggct
ttgttgggcgtgccaacaattctgtatcctgaccccaccaccactgctgctgctactaca
gagaccccagcaatagaaactccctcccagctccccgatgaggccccagagaaaaacacc
aaagaaaagaggaagaggaagaaagagcgggaccgttccaaagtggagaataaggaggag
caggggacgacacagggcaaagcggccgaggagaaaccccagaagacacccttccttacc
caaccggttacaggtatgtctccaaggaaaccgtttgagtgtgacagcgatgcagcggcc
gacatcatgttgttggtggacggctcctggagcattggacgcaccaacttcagacgggtc
agagacttcttggagggcctgatgacaccctttcacattggtccggaccacattcagatc
ggtctgacccagtacagtggagacccccgcacagagtggcagctcaacaactttacgact
aaagaccagctgttggaggccgtaaggaatttcagatataagggaggaaacacttttaca
ggccaggcactgctccatgtcatggaggagaacatgagggctaaggcaggcgcgaggtcg
gacacaccatttttcctggtcttgttgaccgatgggaaatctcaggatgacgccattgct
gcggcaaaccggctgaagaatgccggcgtggagatcatcgctgtaggtgtaaagaatgct
gacgaggctgagttgagacaagtggcgtcggagccggtggatctgaacgtctacaatgtg
aatgacttccctctgctcagcaaactagtggcacgactggtccacattctctgtgggagg
atagaggaccgtggcatctcaaaaagaatggagcctgggcccacagcagacccagccctc
tcctaccccagtcctactgatctccggttctctgaactgggctccagagaagtaaagctt
cactggaccaatccttctaagccagtccaacagtacagagtggtctaccacagcgccgag
ggtcagagtccacaggaggtggtattggccggctcagagtccactgtgctgctggaaggc
ctctcctctcagacactgtaccacgtgtccatcttccctgtgtatgaagacaatgttggc
ctggcactcagaggaactgtcactacattgcccctggccatgcctgccaacctggaggtg
actcctgcctcttacagcacactgcgagtgagatggggtgctgcgcccggtgcaacacag
tacatggtcctgtactcagcactcaaccacggagagcctgatgacgccaaggaggagaaa
ttcagtgcagaccagaccatggtggagctggcagggttactgccggcaaccgactactct
gtgactctctatgccctgtatgacgaggatcccagcgaccctgtcactgctgttgccacc
acattccctctcccacagccgatgagtgttcacttcccggtggtcacccacagtatgctg
agggtaagctgggtgcccggagccgtggacatccccagccacagaatcacctacagcacc
aaccacggcagtgacgtcaagcaggtggaggtaacaggactgatctctgtggtggtgcag
aacctctcctctctgtctagatatctggtttcagtccagtctctctacccacaaggcctg
tctgcagcactgaccagtaacgtcaccacactgaaggtgccgtccccatcagacctcagg
gtgactaatttctcaggcagtgatatcaccgttcgctgggaggcggcagctgatgatgtc
gtctcctacctcatcaagtggatctccctcagtggaggagacctgagacagctgagggtg
agtggtgagagtgaaggggcaatcctggagggggtggaggacgataaggaataccagatc
tctttgtctgcactttatcgagatggagctcagagtgaagccgtggccacacgctatagc
acattgtctggtggaggcccagccagcatatcggtctctgaggagacagcggtcagcttg
gtggtcagctgggtgcctcccaacgctcatgtcctccagtatcgtgtgtcttacaccgca
ctgactgcagctgaaacccaggacagcactgtggtggttccaggtggtgaaaagcaggtg
gtgctcaagtctttacagccagatacacgttacagcatcctggtcaccgccgagtaccgc
aacagagaaggtggcagcggttcagctcagggcaaaaccaccagtctgcgagtaagcagc
gtgagtgtggtcaggtcagaccactccagtatctgtgtgtcttggagacccgtgtctact
gtcgatggatatcgcattgtcatccagtccgtcaaagacaagcaaacaaaggaagaaact
gtcgacgagtccagcagcagtcactgtttcactgatctggaaccagagactctgtatcgc
atcagtgtgcactcgctgctcagctcagcagagggcgctgccgtctccattctccatcca
acagccacggttcctgccagaattcccatccatccccggatttaccctatccacaatgaa
gtctgccctgaagtcaccatcagaaacagcattgttaaaggatttgacatgatggaagca
tttggtctgactaagaatgctcactcgtctgtggagggcgtggcagccgagccttttgtc
ttcaacactctccccaccttcactctgtacagagacgtccaactgacacagagcaccaag
tttatccaccctgccggtttctctccagaacacaccatcagcatcaccttccgcgtgttg
caggaaacacccagggagcccttcgccctctggcagctcactgacaatgacttccagccc
aagatgggagtggtgctcgaccctaataccaagcatctggtgtacttcagtctggactac
aggggagaagtacaggaactgacctttgaccagtcgcaggtctacagactgttctatggc
agttttcacaaggttcacctgtctgtcagccaggtgagtgtgtccctgtctgtggactgc
cagcgtgtgggtgagaggcctgcacgccctctaggcaacctgccgactgacggctttgag
atgctgggaaaactggtgaagaccagaggacccaatagtggatcagcaccgttccagctg
cagtcctttgagatcgtgtgtaacactacgtgggctttagaggatacctgctgtgacctg
cctggagtgagagatgaggagagctgtcctgccccggcgtacacctgtacctgttcctct
gacatccccggagctcccggttcccctggaccaaccggaaagccaggtcctcgtggggag
aaaggcgataagggagaccaaggccaaaagggggaggtgggtcctccaggaaagcctgga
tttgagggaggtcttggacccctgggcagcacaggaccccgaggcatggccgtgcagggt
aaagtgggtccacctggtccaagaggggaaaggggagatcctgggcgtccaggggtccag
ggtttaccaggacctccaggtccaaagggggaagaggggattccaggccccaagggcatt
agggggctcgaaggtaacattggtggaccaggccttactggacccaggggtttccaagga
atgccaggacacccaggacctataggagaaaggggctactcaggacctgtgggacctacg
ggtctgccaggggggaaaggggagcgaggagagaagggggaacctcagtctatggccatg
atctacaaactggtcacacaggcctgtgagcaactagtgcataaggaggtgttgaagctt
gatatgttcattaacgagataagtcgaaagccagctccaattgaggagccggtggcgccc
cccggggaacctggtataccagggcccaagggcccgccaggcgccaggggcacccagggg
catgtcggcccaagggggagacctggcaagcctggatatccaggagaacagggaaggaga
ggtatgccaggggggaaaggtgacgcaggacccaatgtgcaggggcccacagggatcaaa
ggatttgcaggccctccaggggagtccaagctgggaatcccaggtccaaaaggagaggat
ggtaaggcaggacccgcagggatcactggacctcctggacagccgggcgagattggaccg
ccgggtgtgtgtgacagcagtggaggctgccacagagttccccagcaaacagaagaccct
tattatggctaccagccttga
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