Sander lucioperca (pikeperch): 116041112
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Entry
116041112 CDS
T07345
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116041112 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116041112 (ddx6)
03036 Chromosome and associated proteins [BR:
sluc03036
]
116041112 (ddx6)
Enzymes [BR:
sluc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116041112 (ddx6)
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
116041112 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
116041112 (ddx6)
Chromosome and associated proteins [BR:
sluc03036
]
Eukaryotic type
Gene silencing
piRNA pathway
116041112 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
116041112
NCBI-ProteinID:
XP_031142827
Ensembl:
ENSSLUG00000012055
LinkDB
All DBs
Position
5:complement(40073578..40087112)
Genome browser
AA seq
481 aa
AA seq
DB search
MSTARTENPVILGLSNQNGQLRGPVKPAGAPGGGGGPLLQQLNQMKGTINNGNSPPVPTT
NAVIKPGDDWKKNLKLPPKDMRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPI
QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKRDCIQAVVIVPTRELALQVSQ
ICIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVIIATPGRILDLIKKGVAKVNQVQM
VVLDEADKLLSQDFVLMMEEMLGFLAKQRQILLYSATFPLSVQKFMNAHLQKPYEINLME
ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCF
YIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHRI
GRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPGIIDKSLYVAEYHSESGEELK
P
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccgccaggacagagaacccagtgattttgggcttgtccaaccagaacggacag
ctcagaggcccggtgaagcctgctggagcaccaggtggaggtggaggccctctactacag
caacttaatcagatgaaaggcacaatcaacaatggtaactcccctccggtccctacaacc
aacgctgtcatcaagcctggagatgactggaagaaaaatttgaaattgcccccaaaagac
atgagaatgaaaacttcggatgtgactgcaactaaaggcaacgagtttgaagattattgc
ctaaagagggagctgctgatgggaatctttgagatgggctgggagaagccatctccaatt
caggaggaaagcattcccattgcactgtcaggaagggatatcttggccagagctaagaat
ggcacgggaaagagtggagcctacctcattcccttacttgaacgcattgacctgaagagg
gactgcatacaagctgtggtcatagtgcccaccagagaactggctctgcaagtaagccaa
atatgtatccaggtcagcaaacacatgggtggagtcaaggtaatggcaaccacaggtgga
accaacctacgcgatgacatcatgagactcgacgaaacggtacatgtgatcattgccact
cctgggaggattttagacctcatcaagaaaggggtggctaaagtcaatcaagtgcagatg
gtcgttctggatgaagctgacaaactcctgtctcaggactttgtgcttatgatggaggaa
atgctgggcttcctggccaaacagaggcagattctgctttattctgcaaccttccctctc
agcgtgcaaaagtttatgaatgcacacttgcagaaaccctatgagatcaacctgatggag
gagcttacactgaagggtgtgactcagtattacgcttatgtaactgaaaggcaaaaggtc
cattgccttaacaccttgttctccaggctccagatcaaccagtctattatcttctgcaac
tcctctcagagagtggagctccttgccaagaagatctcccagctcggttattcatgtttc
tacattcatgccaagatgagacaggagcatcgcaaccgtgtgttccacgactttagaaat
ggcctctgccggaatcttgtctgcactgaccttttcacaagaggcattgacattcaagct
gtgaatgttgtgatcaatttcgactttcccaagctgggagaaacgtaccttcatcgcatt
ggtagatctggccgctttggacacttgggtctggccatcaacctcatcacttacgatgat
cgcttcaacctgaaagggattgaggagcagcttgggacggagatcaagcccatccctggc
atcattgacaagagcctatatgtggcagagtaccacagtgagagtggcgaagaactcaag
ccatga
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integrated database retrieval system
