Sander lucioperca (pikeperch): 116041168
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Entry
116041168 CDS
T07345
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03030
DNA replication
sluc03420
Nucleotide excision repair
sluc03430
Mismatch repair
sluc03440
Homologous recombination
sluc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116041168 (rpa1)
03420 Nucleotide excision repair
116041168 (rpa1)
03430 Mismatch repair
116041168 (rpa1)
03440 Homologous recombination
116041168 (rpa1)
03460 Fanconi anemia pathway
116041168 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sluc03000
]
116041168 (rpa1)
03032 DNA replication proteins [BR:
sluc03032
]
116041168 (rpa1)
03400 DNA repair and recombination proteins [BR:
sluc03400
]
116041168 (rpa1)
Transcription factors [BR:
sluc03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
116041168 (rpa1)
DNA replication proteins [BR:
sluc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
116041168 (rpa1)
DNA repair and recombination proteins [BR:
sluc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
116041168 (rpa1)
MMR (mismatch excision repair)
116041168 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
116041168 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
Pox_vIL-18BP
RADX
DUF223
Motif
Other DBs
NCBI-GeneID:
116041168
NCBI-ProteinID:
XP_031142916
Ensembl:
ENSSLUG00000025453
LinkDB
All DBs
Position
5:13092324..13121608
Genome browser
AA seq
599 aa
AA seq
DB search
MTKLSEGAIEALSNGTGGNDAVLQLVNIRKIDGGSGLPRFRVMMSDGLHTLSSFMLSTQL
NFMAEENRLAPNCVCILKKHVTNILKDKRRVVIILEMEVIKSAEDVAGRIGEPTPYTEGQ
GKGSQLAPNPENRPPLQQQNRNEGNKGFNRDFGKKAPSAMPSTPGDNSKVVPIASLNPYQ
SKWTIRARVTNKSSIRTWSNSRGDGKLFSMEIVDESGEIRVTGFNQEVDKFFSLVEVGKV
YYVSKGSLKIANKQYTSVKNDYEMTLNGESSIIPCEDDCDVPVMQCDFVSIGDLENREKD
AIVDVIGVCKSVDEVTRLTTKSNREVSKRTLNLMDMSGKLVTVTLWGEEAEKFEASGQPI
VAIKGAKLSDFGGRSLSASFSSTLMINPDIPEAYKLRGWYDKEGHAMDGQSLTEVKGSGG
GLTNWKTLSDVKTEHLGHGDKADYYTCIATIVYLRKENCLYQACPSQECNKKVVDQHNGM
FRCEKCDKEFPNFKYRLILSANIADYADNQWVTCFQESAEAILGQNAAYLGQLKDSNEAA
FDEVFQQANFNTFVFRSRVKLETYNDESRIKATVMDVKPVDHKDYSKRLIMNIRKLAAQ
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagctatcagagggtgcgatagaggctctatcaaatggcaccggtggcaacgac
gcagtgcttcagttggtgaacatccgcaagattgatggaggaagcggtctacctcgcttt
cgggtgatgatgagcgatggactgcacacactgtcttccttcatgctctcaacgcagctg
aacttcatggctgaggagaacagactggccccaaactgcgtctgcattctcaagaagcat
gtaactaatatactgaaggataaacgacgggtggtgatcatcttggaaatggaagtcatc
aagagtgctgaagatgttgctggaagaataggtgaacccactccttacactgagggtcag
ggcaaaggctcgcagttggcaccaaaccctgaaaaccgccctccactacagcagcaaaat
agaaatgaagggaacaaaggtttcaatagagactttgggaagaaggccccatctgctatg
cccagtactccaggggacaactccaaagttgtgcccattgccagcctcaacccctatcag
tccaagtggaccatccgtgcccgtgtaaccaacaagagcagcatccgtacatggagcaac
tctcgtggtgatggcaaactcttctccatggagattgtggatgaaagtggagagatacga
gtgactggtttcaaccaagaggtggacaagttcttcagccttgttgaggttggcaaggtc
tactatgtctccaagggctccttgaagatcgccaacaagcagtacacatcagtgaagaat
gactatgagatgactctcaatggagagtccagcatcatcccctgtgaagacgactgtgat
gttcctgtgatgcagtgtgactttgtttctatcggtgacctagagaacagagaaaaagat
gccatcgttgatgtgatcggagtgtgtaagagtgtggatgaagtgacccgcctcaccacc
aagtccaacagagaagtgtccaaaagaacgctcaacctgatggacatgtctgggaagctg
gtgactgtcacgctgtggggagaagaagcagagaagtttgaagcctctggacagcccatt
gtagccattaagggggcgaagctttcagactttggaggccggtccctctctgcatccttc
agcagcaccctgatgatcaaccccgacatccctgaggcatataagcttcgaggctggtat
gacaaggagggtcatgccatggatggacagtctctgacagaggtgaaaggcagcggggga
ggactaaccaactggaagactctgtctgatgttaagacggagcacctgggacatggagac
aaggccgactattacacctgcatagctaccatagtgtacctgcgcaaggaaaactgcctt
taccaggcctgtcccagccaggaatgcaacaaaaaagtggtagaccaacataatggcatg
ttccgctgtgaaaagtgtgacaaagagttccccaacttcaagtaccgcctcatcctttca
gccaacattgcagattacgcggacaatcaatgggtgacttgcttccaggagagtgcagag
gccatcctgggccagaatgcagcttaccttgggcagctcaaggactcgaacgaagctgcc
tttgacgaggtcttccaacaagccaacttcaacacttttgtcttccgtagcagagtgaag
ctagaaacatataacgatgaatccaggatcaaggctacagtgatggatgtgaagcctgtt
gaccataaggactacagcaagaggttgatcatgaacataaggaaactggctgctcagtag
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