Sander lucioperca (pikeperch): 116041230
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Entry
116041230 CDS
T07345
Symbol
trim71
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116041230 (trim71)
04121 Ubiquitin system [BR:
sluc04121
]
116041230 (trim71)
Enzymes [BR:
sluc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116041230 (trim71)
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116041230 (trim71)
Ubiquitin system [BR:
sluc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
116041230 (trim71)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
SGL
ANCHR-like_BBOX
TEN_NHL
zf-RING_5
zf-C3HC4
zf-RING_2
Ig_GEX2_N
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
116041230
NCBI-ProteinID:
XP_031142979
Ensembl:
ENSSLUG00000022561
LinkDB
All DBs
Position
16:complement(2317806..2350347)
Genome browser
AA seq
837 aa
AA seq
DB search
MLQMASFPDTDLQTCPLCKELCGSSAPISSSSSTSSSSSHTSSSSSQTNRRLHVLPCLHA
FCRQCLEGQRSPGDPLKLRCPTCDQKVCISEAGVDSLPSSNFLFSNLLDVVVSSEEQIQN
KNGGHHHHPRGGLGGGSSGFHHPNHGGLLHPNHLGEPQCSSCDEENPATSHCLDCQEYLC
DNCVRAHQRVRLTKDHFIERLGENFHLGRNNVNNKPGQPGVSVSLAQSLQNNFALLSLFQ
DHMSFCQHHDNEVFLFFCESCSVPICRECSVGRHMGHTFIYLQDAVQDCRAITIQLLADA
QQGRQAVQLSMEKVQAMAEQVEIKAKVVQTEVKALVLKHKKALEERECELLWKVEKIRQV
KAKSLYLQVEKLHQSLTKLDSTIAAVSQVLDEGRHLDVLLARERMLTQIHELKALRSLLQ
AQEDDRFMFTPPDQALYIAIQSMGLISSGAFAPVTKAHGEGLKSALRGKPASFTVIGYDH
DGEPRLSGGDTVSAIVMSVPDGNLSAAEVQDHQNGSYSVSYLPKTEGEHLVSVLVCNQHI
QGSPFKVIVKSGRSYGSLGSQVSSFGCEGEGDGQLCRPWGISVDKEGYVVVADRSNNRIQ
IFKPCGAFHHKFGSLGSRPGQFDRPAGVACDSQRRIIVADKDNHRVQVFTFEGQFLLKFG
EKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRVQLFAPDGSFLNKYGFEGALWKHFDSPR
GVAFNHEDHLVVTDFNNHRLLVIRPDCQSARFLGSEGTGNGQFLRPQGVAVDQENRIIVA
DSRNHRVQVFEPNGNFLCKFGTQGSSFGHMDRPSGVAVTPDGVIVVVDFGNNRILKF
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgctgcagatggcttcgttcccagacacggacctgcagacctgcccgctctgcaaggag
ctgtgcggctcctctgctcctatttcttctagctcttctacctcttcatcttcctcacat
acctcatcctcctccagccagaccaacaggaggctccacgtcctgccctgcctccatgcc
ttctgcaggcagtgcctagagggccagcgcagtccaggggacccgctgaagctccggtgc
cccacctgtgaccagaaggtgtgtatctctgaggctggagtggactccctgccttcttcc
aacttcctcttcagcaatctgctggacgtggtggtgagctctgaggagcagattcagaac
aagaatggcggccaccaccaccacccccggggaggcttaggtggaggctcctctggcttc
catcaccctaatcatggaggcctgctgcaccctaaccacctgggagagcctcagtgcagt
tcctgcgacgaggagaacccagccacctcccactgccttgactgccaggagtatctgtgt
gacaactgtgtgcgggcacaccagagggtgcggctgaccaaggaccacttcatcgagcgc
ctgggagagaacttccacctgggccgaaacaatgtcaacaacaagccgggccagccgggg
gtatcggtgtctctcgcccagtccttgcagaacaactttgccctgctgtccctgttccag
gaccacatgagcttctgccaacaccatgacaatgaggtgtttctgttcttctgtgaatcc
tgctcggtgcctatctgtagggagtgcagtgttggccgtcatatgggccacacctttatt
tatctacaagatgctgtacaggactgcagggccatcaccatccagctgctggcagatgcc
cagcagggacgtcaggctgtgcagctaagcatggagaaggtccaggccatggcagagcag
gtggagatcaaagccaaggtggtgcagacggaagtaaaggcccttgtgctcaaacacaag
aaagcactggaggagagggagtgtgaactactgtggaaggtagagaaaatccgtcaggtg
aaggctaagtctctgtacctgcaggtggagaaactgcaccagagtctgaccaagttggac
agcaccatcgcggccgtcagccaggtgctggatgagggccgccaccttgatgtgctgctg
gccagagagcgaatgctcacccagatccatgaactcaaggctttgaggagcctgctgcag
gcgcaagaggatgaccgcttcatgttcactcctccagaccaggctctatacatagctatc
cagtcaatgggccttatcagcagtggagcctttgccccagtcaccaaagcccatggtgag
ggtctgaaaagtgcactacgtggcaagcctgcatccttcactgtgattggatacgaccat
gatggcgagccacgtctttccggcggggacacggtgtctgcaatagtcatgtcagtccca
gacggtaacctgtctgcagcagaggtacaggaccaccagaatggctcctacagcgtcagc
tacctgcctaaaactgagggggagcaccttgtgtcggtgttggtgtgtaaccagcacatc
cagggcagccccttcaaggtgatcgtgaagtcagggaggagctatggctccctgggctcc
caggtttcttccttcgggtgcgagggggagggagatggtcagctgtgtcgtccctggggc
atcagcgtggacaaggagggatacgtggtggtggccgatcgcagcaacaaccgcatacag
atattcaagccttgcggtgccttccaccataagtttggctctctgggttctcggcctggt
cagtttgatcgtccagcgggggttgcatgtgacagtcagagacgaatcattgtggctgat
aaagacaatcaccgtgtgcaggtgtttacttttgagggccagttcctgctgaagtttggg
gaaaagggtactaagaatgggcagtttaactatccctgggatgtggctgtcaactctgag
ggtaagatcctggtctcagacactaggaaccaccgtgtgcagctcttcgcccctgacggc
tctttcctcaacaagtatggctttgaaggggccctatggaaacactttgactctcccaga
ggagtggcctttaatcacgaagaccacctggtggtgaccgacttcaacaaccacaggctc
cttgtcatccgaccggactgccagtcagctcgctttctgggctctgagggcaccgggaac
ggtcagtttctgcggccccagggcgtcgctgtggaccaggagaaccgaatcatcgtggcc
gactcccgcaaccaccgagtccaagtgtttgagcccaatggaaacttcttatgcaaattt
ggcacacaggggagtagctttggacacatggatcgcccctccggtgtggctgtgacgcct
gacggagtcattgtggtggttgactttggaaataatcgcatcctcaagttctaa
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