Sander lucioperca (pikeperch): 116041688
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Entry
116041688 CDS
T07345
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03008
Ribosome biogenesis in eukaryotes
sluc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
116041688 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
116041688 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116041688 (xrn1)
03009 Ribosome biogenesis [BR:
sluc03009
]
116041688 (xrn1)
03016 Transfer RNA biogenesis [BR:
sluc03016
]
116041688 (xrn1)
03036 Chromosome and associated proteins [BR:
sluc03036
]
116041688 (xrn1)
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
116041688 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
116041688 (xrn1)
Ribosome biogenesis [BR:
sluc03009
]
Eukaryotic type
Pre-60S particles
RNases
116041688 (xrn1)
Transfer RNA biogenesis [BR:
sluc03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
116041688 (xrn1)
Chromosome and associated proteins [BR:
sluc03036
]
Eukaryotic type
Gene silencing
piRNA pathway
116041688 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
116041688
NCBI-ProteinID:
XP_031143562
Ensembl:
ENSSLUG00000016920
UniProt:
A0A8C9ZDD7
LinkDB
All DBs
Position
9:1399461..1429286
Genome browser
AA seq
1707 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
VLPTEARFDSNCITPGTDFMARLQEQLKYFVHNKLSTDKLWQNVNVYLSGHETPGEGEHK
IMEFIRSENSKPSHDPNTRHCLYGLDADLIMLGLTSHEPNFSLLREEVRFGGKKNQKRIS
APEETTFHLLHLSLMREYIDYEFSGLRNQIGSDYDLERIIDDWILMGFLVGNDFIPHLPN
LHISHDALPLLYKTYISALPTMGGYLNENGHLNLRNFEKYIEKLAEFDREHFSEIFVDLK
WFESKVGNKYLNEAAGLAAEREAAIKETNKNEDSTSSERVTGEGKGGVGDDEEEEDDMFE
TEFRQYKRTYYMTKMGVDVVSDDFLAKQAKCYVEGIQWILHYYYHGVQSWSWYYPYHYAP
FLSDIRNISELKLTFDLEKPFMPFQQLLAVLPAASKELLPESYRHLMTSENSPIIEYYPV
DFKTDLNGKQQEWEAVVLIPFIDERCLLAAMEPYNLKMTKEEKARNRHTECAVYSYDSEK
DFMYYSPLPQLFPDIVHCHVRKADIPMDAWHVQLDHVSRRLDRSSLYFCGFPTLQHIKHK
FFKKKSGVVVFQQSSRGENMMLEILPSQDAEAGCDDVAAQVLGKSVFVNWPHLEEARIIA
VSDGDVKFCLEEPPGVQRVYDRPSTPPPTKVTCLSDKEQKDWVKDVQGLTEHFLKRKGIM
VNETSVVLYGQLLTGRKYVPKANGVVELEKQWAKQVLPFAYQTVVKDIKAFYSCLTCFKS
LDELFPPATTVFMVGNPYYGAVGEVQDSSDVIKDGRVRVVFNVPHEPQLEPLIQNQHKYC
VKYSPGYVLASRLGITSYLVSRFSGSIFIGRGSKRNPCGEQKANVGLNLKFNKKNEEVPG
YTKRTEKEWLYSAAVEELLAEYLDRFSEVFNSVSRNGHDDVFYEDDIWPEEDQNGAERVA
EITSWLKSHPVSSIGRTSCDLQVLDSAIVERIEEAVEKAKVKKSTKKVRVTVKPHLLFRP
LEQQQGVIPDPDAEYRLFDRVINTREGFTVPLGLRGTVIGIKGADREAEVLYEVLFDEEF
AGGLSIRCTSPRCYRLPPCALINFTHGTRVDQTSHKLTAIVKPQPATAANFNSHRQLSGL
NHSPRSPFIPTQHNNKHGMGKAASQGNRNSPSKGPILKQQSKEYSNVWQSLQNSGPPLNP
PAHWHNEGLSQQRKNQHSNEAAPVGGIRLLKKNEDVNSLFPPQNTANKATTEFEDLIAGL
KISTGNQQTPPPPAPPQAPASQSDGPLSPQSFAMKGTLMLKEMLKIAGAGTGSPSSQEAD
STGGQQQNRRRSSKKLAANMNAPHGDAAAMASPALAVSANLSNAGLTSKVSELTCVCVGL
GMAPPDFSYIGNRQGRTVVCQVKLSNGLMVHGPQCQSENDAKEKAAFFALQRLNSVGSGF
PLPPPLYPGVGQIRPPPLGAMGPVFSQQGGLLLPHQGFGPAPLWGMPLPPPHHQNQPFYG
AAGTFPGAARSQPATTVPIGSHNQFIPLQVTKKRVSANKKNQDTREFYSAAHIVTRNESQ
KAHNQHSQSLAQGGPQGGKVDQPHQYAANINPSSSSPGQVDGVATTNAVPHTPPRQNVPA
TGHTPGSSGKRKHRKLAVNFEAAKVSE
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccgaaattttaccgatggatttcagagcgctatccttgtctcagtgaagtt
gtcaaggaacatcagattccagagtttgacaatctctatctggacatgaatgggattatc
catcagtgttcccacccgaacgacgaggatgtccactttcgcatttccgaggaaaagatt
tttgctgacatcttccattacctggaggtgctcttcaggatcatcaagcctcgcaaggtc
ttcttcatggcagtggatggcgtggcaccaagggcaaagatgaaccagcagcgaggacgg
agattcaggtccgccaaagaagcagaggacaagataaaaaaagctctggaaaaaggagag
gtgcttcccacagaggctcgcttcgactccaactgtattactcctggcactgacttcatg
gcaagactccaggagcagctcaagtattttgtccacaacaagctctccaccgacaagcta
tggcagaatgtgaacgtatacctgtctggccatgagactccaggggaaggagaacacaag
atcatggagtttattcgctctgagaactccaagccgagtcacgacccaaacacccgacac
tgcctatatggcctggatgctgacctgatcatgttgggtttgaccagccatgagccaaat
ttctccctgctcagagaagaggtccgctttggaggaaagaaaaaccagaaaaggatatcg
gctccagaggagactacttttcacttgcttcacttgtctctgatgagggagtacatagac
tatgagttctctgggctcaggaatcagattggttctgattatgacttggagcgaataata
gacgactggattctaatgggtttcctagtgggaaacgatttcatccctcaccttcctaat
cttcacatcagtcatgatgctctgccgttgctgtacaagacgtacatcagtgctctgccc
accatggggggttatctgaatgagaacggccatctaaatctcagaaactttgagaaatac
attgagaagcttgctgagttcgaccgggaacatttcagtgagatctttgtggacttgaag
tggtttgagagtaaagttggaaacaagtatctgaatgaggcggccggactggcagcagaa
agggaggctgccatcaaagaaaccaacaagaatgaggattctacctcatcagaaagagtg
actggagaaggaaaaggaggagtaggcgacgatgaggaagaggaggacgatatgtttgaa
actgagttcagacaatacaagcgcacctactatatgaccaagatgggcgtagatgtggtg
tctgatgactttctagccaagcaggccaagtgttatgtggaaggtatacagtggattctc
cactactactaccatggcgttcagtcctggagctggtactacccctaccactacgctccc
ttcctgtctgacatcaggaacatatcggagttaaagttgacctttgacctggagaaaccc
ttcatgcccttccagcaactgttggcagtcctgcctgctgccagcaaggagctgctgcct
gagagttacaggcacctgatgaccagtgaaaattcacccattattgagtactaccctgtt
gattttaaaacggacctcaatggcaagcagcaggaatgggaggctgtggttcttattccc
ttcatagatgagaggtgcttactagcagccatggagccctataatctcaagatgaccaaa
gaagagaaggccaggaatcgtcacacagagtgtgcagtctactcatatgactctgaaaaa
gacttcatgtactactcccccctgcctcagctgttccccgacatcgtccactgccatgtc
aggaaagcagacatccctatggatgcctggcatgtacaattggaccacgtcagcagacgc
ctcgaccgctcatctctgtacttctgtggcttccccacactgcaacacatcaaacacaag
ttctttaagaagaagagtggggtggttgtgttccagcagagcagcagaggggagaacatg
atgctggagattctcccgagccaggacgcagaggcaggatgtgatgatgttgctgcacaa
gtactggggaagtcggtgttcgtcaactggccacatctagaggaagctcgcatcattgca
gtgtcagatggcgacgtcaagttttgtctagaggaaccacctggtgtccaaagagtgtat
gacaggccctccactcctccccccaccaaagtcacctgcctgtctgacaaggagcagaag
gactgggtgaaggatgtccagggactcactgaacatttcttgaagaggaaaggcatcatg
gtgaatgagacatcagtggttttgtacggccagttgctgacaggaaggaaatacgtcccc
aaagccaacggggtggtggaacttgagaaacagtgggccaagcaggtcctgccgtttgcc
taccagactgtggttaaggacatcaaggccttttactcgtgtctgacctgctttaagagc
ttagacgagctctttcctccagcaaccactgtcttcatggtggggaacccttactacggt
gccgtgggcgaggtgcaagactccagcgatgtcattaaagacggccgggtacgagtggtc
ttcaatgtgccgcatgaaccacagctggagcccttaatccagaatcagcataagtactgt
gtgaagtacagccccgggtacgtcctggcatctcgtctcggcatcaccagctaccttgtc
tcccgcttctcaggaagcatcttcattggtagaggctctaagaggaatccctgtggagag
caaaaagctaacgtcggcctgaacctcaagttcaacaagaagaatgaggaggttcctgga
tacaccaagagaactgaaaaggagtggctctactctgctgctgtggaggaactactggcc
gaatacctggacagattttctgaggtgttcaactcagtgtcaagaaacggtcatgatgat
gttttctatgaagatgacatttggcctgaagaggaccagaatggggcggagagggttgct
gaaatcacctcatggttgaaaagtcacccagtgagctccatcggcaggacttcatgtgac
ctacaggtgctggactctgccatcgtggagcggatcgaggaagcagtggagaaagccaag
gtgaagaagagcaccaagaaagtccgtgtgacagtcaagcctcatctcctctttaggccc
ttggagcagcagcagggagtgattccggacccggatgcagagtatcgcctgtttgacaga
gtcatcaacaccagggagggcttcaccgtcccactgggactcagaggaaccgtcatcggc
attaaaggagcggatcgtgaggcagaggttctctatgaagtgctttttgatgaagaattt
gctggaggtctctctatcaggtgtacttcacctcgttgttaccgcctccctccctgcgct
ctcattaactttacccacggaacgcgagtggatcaaacctcccacaaactcaccgccatc
gtcaaacctcagcccgccacagccgcaaacttcaactcacatcgccagttgtccggcctg
aaccactctccacgttcaccctttatacccacacagcataacaataaacatggtatgggg
aaggcagcctcccagggcaacaggaactctccctctaagggtcctatcctgaaacaacag
tccaaggagtacagtaatgtgtggcagtctctgcagaactctggtcctcctctcaaccct
cctgctcactggcacaatgaaggactttcccaacagcggaagaaccagcactctaacgaa
gctgccccagttggtggcatcagactgttgaagaaaaatgaagatgtcaactcccttttc
cccccacagaacacagccaataaggctacgactgagtttgaggacctgatagccggtctc
aagatctccacgggtaaccagcagaccccgccccctccagctcctccacaagcacccgcc
agccagtcagatggcccgttgtctccgcagtccttcgccatgaagggaaccctgatgctg
aaggagatgctgaagattgccggtgcgggaacaggaagtccctcttctcaggaggcagat
agcaccggtggccagcagcagaacaggagacgatcatccaagaaactagcagcaaatatg
aacgccccacacggtgatgcagctgcaatggcgtctcccgcattggctgtttctgctaac
ctctccaacgctgggctgaccagtaaggtgtcagagctgacgtgtgtctgcgtggggtta
ggaatggcaccacccgatttcagctacataggcaacagacagggtcgcacagtagtgtgt
caggtgaagctgtccaatgggttgatggttcacggtccccagtgccaatcagaaaatgat
gccaaggaaaaagctgctttctttgccctccaacgactgaactcagtgggatctggcttc
cccctcccaccccctctatacccaggagtggggcagatacgacccccacccttaggagcc
atgggccctgtcttcagccagcaaggtgggttgctgttgcctcaccagggttttggccct
gcccctctgtggggaatgccgctgcctcctccccaccatcaaaaccagccgttctacgga
gcagcaggaaccttccctggtgccgcccgctcccagcctgccacaacagtgcccatcggc
tcacacaaccaatttattccattacaggtgactaagaagcgagtctcggccaacaagaag
aaccaggacactcgggagttttacagcgccgcccacattgtgaccagaaacgaatcacag
aaagcccacaaccagcacagccaatctctggctcagggtggaccccagggcggtaaagtc
gaccagccgcaccaatatgccgccaacatcaacccctcctcgtccagtcctggccaagta
gacggcgttgccacgacgaatgcagtcccgcacacaccccctcgacaaaacgtcccagcc
acgggccacacccctggctcctccggcaagaggaagcacagaaagctggctgtcaacttt
gaggcagccaaagtctctgagtga
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integrated database retrieval system
