Sander lucioperca (pikeperch): 116042540
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Entry
116042540 CDS
T07345
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03020
RNA polymerase
sluc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
116042540 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
116042540 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sluc03021
]
116042540 (polr2b)
03400 DNA repair and recombination proteins [BR:
sluc03400
]
116042540 (polr2b)
Enzymes [BR:
sluc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
116042540 (polr2b)
Transcription machinery [BR:
sluc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
116042540 (polr2b)
DNA repair and recombination proteins [BR:
sluc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
116042540 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
116042540
NCBI-ProteinID:
XP_035862233
Ensembl:
ENSSLUG00000008897
LinkDB
All DBs
Position
1:complement(7269753..7294530)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDPQYEEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCSGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaccaggacgaagatcctcagtatgaagaggacgatgatgagatcactccagat
ctgtggcaggaagcgtgctggatcgtcatcagctcttattttgacgagaaggggctggtg
cgccagcagctggactccttcgatgagttcatccagatgtcggtccagaggatcgtagaa
gacgctccgccgatcgacctgcaggctgaggcccagcacacatctggagaggtggaggag
ccgccccgttacctgctgaagttcgagcagatctacctgtccaagccgacccactgggag
agagacggagcgccgtctcccatgatgcccaacgaagcccggctacgaaacctcacgtac
tcggcgccgctgtacgtggacatcaccaagacgatcataaaggagggcgaggaccagctg
cagacacagcaccagaagacgttcatcgggaagattcccatcatgcttcgctccacctac
tgtctgctgagcggcctgacggacagagacctgtgtgagctcaacgagtgtccgctcgac
cccggcggctacttcatcatcaacggctccgagaaggttctgatagctcaggagaagatg
gccaccaacacggtctacgtgtttgccaagaaggactcgaagtacgcgtacacaggcgag
tgccggtcctgtttggagaactcgtcccgtcctaccagcaccatctgggtcagcatgatg
gcccggggggggcagggcgtgaagaagagcgccatcggtcagaggatcgtgtccacgctg
ccgtacatccgacaggaagtgcccatcatcatcgtgttcagagcgctgggcttcgtgtcc
gacagagacatcctggagcacatcatctacgacttcgacgaccccgagatgatggagatg
gtgaagccgtctctggacgaggcgtttgtgatccaggagcagaacgtggcgctgaacttc
atcggctcccgaggagccaagcccggcgtgaccaaggagcgccggatcaaatacgccaaa
gaagtcctgcagaaagaaatgctgccacacgtcggagtcagcgacttctgtgagaccaag
aaggcctatttcttagggtacatggtccacaggttgctgctcgccgctctcggcagaaga
gagctggatgacagagatcactacggcaacaagagactggacctggccgggcccctattg
gccttcctgttcagggggatgtttaagaacctcctgaaggagatcaggatctacgctcag
aagttcatcgaccgagggaaagacttcaatctggagctcgccatcaaaacccgaatcatc
tctgacgggctgaagtactcactggccactgggaactggggcgacgtgaagaaggctcac
caggcccgcgctggcgtctcccaggtgctgaaccgcctgaccttcgcctccactctgtct
cacctccggcgagtaaactctcctatcggcagagacgggaagctggccaaaccgcgacag
ctgcacaacacgctgtgggggatggtgtgtcctgccgagacgccagagggccacgctgta
ggtctggtgaagaacttggccctcatggcctacatctccgtcggctcgcagccgtctccc
atcctggagttcctggaggagtggagcatggagaacctggaggagatctctccggccgcc
atcgcagatgccactaagatctttgtgaacggctgctgggtgggaatccacaaagatccc
gaacagctgatgaacacgctgaggaagctccgcagacagatggacatcatcgtctccgag
gtgtcgatgatccgagacatccgagagcgagagatcagaatctacacggacgccggacgg
atctgccggccgctgctgatcgtagagaaacagaaactgctgctgaagagacgacacatc
gaccagctgaaggagcgggagtacaacaactacagctggcaggatctggtggcgagcggc
gtggttgagtacatcgatactctggaggaggagacggtgatgctggccatgacgcctgac
gacctccaggagaagggcgtggcctactgctccacctacacgcactgtgagatccaccca
tccatgatcctgggagtctgtgcttccatcatccccttccccgaccacaaccagtctccc
aggaacacgtaccagtctgccatggggaaacaggccatgggcgtctacatcaccaacttc
cacgttcggatggacacgctggcccacgtgttgtactaccctcagaaaccgctggtcacc
accagatccatggagtacctgcgcttcagagagctgcccgcagggatcaactccatcgtg
gcgatcgcctcgtacacgggatacaaccaggaggactctgtgatcatgaaccgctcggcc
gtggaccgaggcttcttcagatctgttttctatcgatcgtacaaagagcaggagtctaag
aaaggtttcgatcaggaggagatctttgagaagccgacacgtgaaacctgttcaggtatg
agacacgccatctacgataaactggacgacgacgggctgatcgcccccggcgtgcgtgtg
tccggcgaggacgtgatcatcgggaagacggtgacgctgccggagaacgacgacgagctc
gacagcaccaaccgacgctacaccaaacgagactgcagcacgttcctgaggaccagcgag
acgggcatcgtggaccaggtgatggtcacgctcaaccaggaggggtacaagttctgcaag
atccgggttcgctcggtcaggattcctcagatcggagacaagttcgccagccgacacgga
cagaaaggaacctgtgggatccagtacagacaggaggacatgccgtttacctgtgaggga
attactcctgacatcatcatcaacccgcacgccatcccgtccagaatgacagtcggccat
cttatcgagtgtctgcagggaaaggtttctgctaacaaaggtgagatcggtgacgccacg
ccgttcaacgatgccgtcaacgtgcagaaagtatccaacctgctgtctgagtacggatac
cacctgagaggaaacgaggtcctgtataacgggttcaccggcaggaagctgacgtctcag
atcttcatcgggccgacgtactaccagcgtctgaagcacatggtggacgataagatccac
tcgagggcccgcggcccggtccagatcctcaacagacagcccatggagggacggtcccgt
gatggcggtctccgttttggggagatggagcgtgactgtcagatcgcccacggcgcggcc
cagttcctgagggagcggctgtttgaggcgtccgacccctaccaggtccacgtgtgtaac
ctgtgtgggctgatggccatcgccaacacgcgcacgcacacgtacgagtgccgcggctgc
cgcaacaagacccagatctctctggtgcggatgccgtacgcctgtaaacttctcttccag
gagttgatgtcgatgagcatcgctcctcggatgatgacgtcatag
DBGET
integrated database retrieval system
