Sander lucioperca (pikeperch): 116042679
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Entry
116042679 CDS
T07345
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
116042679 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sluc04121
]
116042679 (slx4)
03400 DNA repair and recombination proteins [BR:
sluc03400
]
116042679 (slx4)
Ubiquitin system [BR:
sluc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
116042679 (slx4)
DNA repair and recombination proteins [BR:
sluc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
116042679 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-met
zf-C2H2_jaz
zf-C2H2
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
116042679
NCBI-ProteinID:
XP_031144835
LinkDB
All DBs
Position
4:complement(11052540..11065452)
Genome browser
AA seq
1794 aa
AA seq
DB search
MDDSDQDFVDLCSKLLKRVRKKPSESRQARKAEHQPSSQASGGDRRKNKRAADSGSACAG
TQPVCTGADADDHVVCGGTGHDSGDAESSAVPAAAAAEPSTERGLAAKDKVLHRMQQFKR
ASPQRMVHNDKSRPAKHENGCVPPPPVTHRQESFSPDLHPESLDSDEALALRLQQELDRE
AAEAQTVDLEDGGLFFCQICHRDLSHMTPEGRTQHLNRCLDESEESAPAPPPPPPGVPDC
PICGKKFKSQKSRSAHLKRCSADMGVAPVVLLQALQRQTEETHNVPTANTLTQTGGTKRK
CPSKPGLPVRKKPRKKTAPLDEDTMVALALSSSLLEQEQQSERESERHSQTKMAASHISM
NPALKWRPDTGLQVHHLTPSLSSAHLGAGKGRGKRKKGAIPRPPPLLLVQDAEVALARLQ
ERVSALLLRSRPPSPPTPTRCPSSLPGWSGAAPLWQKSTLQGRASTCLSDFYTPALREFI
TPWESATTDAATSSTINKPASSVQPVGEGTPVPGTRASTLPSSSSQTAPSTPGTGQLLMD
LMELAEDGVTLTQYGHTASGPDKDKRASQITNVRLSGFVVEESEEQADLCASGFLPETTH
SEAARSRATRTVDQPGADKERSSLRSVALSRLASELSSMVNNAQLSDLQLQVDSGEIYFA
HSFMVYARCPLLAEMVHESGFGVQEAGVPAAQRVLMNDVPGQAVFALLQYLYTARCSIPA
SLRPHVLELASRFDLQELQRLCELRRDDAATREDEEDYANQEENVNNQTQQALTELLRSM
WDEEDEDGEGVDTDGGRDEEGELEEDHQADGLASGDGEILEEKVNEEELEEIYEFAATQR
KREEEEDSKEEEEEKVDRDEDGEEKLTKPKRSSTGFSGKNLQPDPSLDRSYSRLFSDSWG
VYEEEGPSSLPSTSRPAKTHTPQSQQHQSPDKPASKLSGRTLLQSSASAVDELSLSPPPS
ASNLPLPGQSPGQLGDWSGGGDKGTDGLALKRDSQGPQRVCVPLSPESPREKKEPELIVL
SDSSEEEEEEPHSRSRAVQKLQSYTQVKPRPTLRPNEPTLENKQSSSLELSPDDPSAAPV
DSPQGPWCEQDPADCSPEVSWLIPSTPLQPGRSTTTTSSTQTKSSMCRTQLFPKGRTSSP
SPSVFSSPALPLNNRLQTSNSPTRVSARVGPAEDSVPKLNLDETHSSSLDLNFCSKRTSS
CDVSKERGVSAFAPCQPNVSKQDTPVHMQPHPYSSTPLHTELHKAPLLPASSLLHSNLDK
SWTHPGRDGAPSESPEKTELGSFYLSPMSEPSDPPLSSSHEVLQSSQSPRSVESSSHNNT
GPELKRRGIRNEKVGEIECENKATGDEGGRDKAEAGEADVAESSFQQSFTATDEPPIAFN
DSWGFDGCVDVEANPGCFSLRLEDSGASSQQGERSLGQGDPARSSSSTGRQPSPSRPGVR
PLNSHGGVEASSPPKGHSTPPPASVQAHTGLSFPPPPPDPPTHTTPERIHSLLDSKIWDS
WEEEEEEEEEALPLSQRVNPAAQLKTPASSHNKRRRTLVAITPLPHYSDMDTPELKNKLT
RFGVRPLPKRQMILKLKEIHQYTHQLVSSDSEGEAPSAGCTARTKHPHTSSEVPGNRPAS
CAQRVTFKEPRAPAAVSPLKPHREEEAELLSASQGSNTSSTAASEESERSNPELCLSSDS
DSDGGISASQAVNRLQDRLRAVRSLILSDSRLYSQILQYQPLVLSQLQERLKAAGIRLGA
AKLVDYLDSQCITFTTAKPGQSASSRRRGKRTAKGTKAARDRGVGRKRAVTAMI
NT seq
5385 nt
NT seq
+upstream
nt +downstream
nt
atggatgactcggaccaggattttgtagatctctgctcaaagctgctaaaacgagtccgc
aagaaaccaagtgagtccagacaggcacggaaagcagagcatcagccctccagtcaggca
agcggtggagacagaagaaaaaacaagagagctgcagactctgggtctgcgtgtgctggg
acccagcctgtttgtactggtgcagatgcagatgatcatgtggtctgtggagggactgga
catgattcaggagatgccgagtcgtcggctgtgccagcagcagcagcagcagaaccgagt
actgagagaggtttggcggcgaaagacaaagtactgcacagaatgcaacagttcaagaga
gccagtccacagaggatggtacacaatgacaagagcaggccagcaaaacatgagaacggc
tgtgtccctcctccacctgtgactcatagacaagagtctttcagcccagatctccaccct
gaatccctggacagcgatgaagctctggccctgcggctgcagcaggagctggacagggag
gcagcagaggcccagacggtggacctggaggacggaggcctcttcttctgtcagatctgc
cacagagatctgtcacatatgacacctgaggggcgaacacagcatctcaacaggtgtttg
gatgagagtgaagagagtgccccagccccccctcctccgcctcctggtgtgcctgactgt
cccatctgtggcaagaagttcaagtcccagaagagtcgctcggcccacctgaagcgctgt
tccgcagacatgggtgtcgctccggttgtgctgctgcaggctctgcagagacagactgag
gagacccacaatgtccccactgctaacacactcacacagactggtggcactaaaagaaaa
tgcccatccaagccaggcctaccagtgaggaagaagcccaggaagaagactgcacccctg
gacgaagacaccatggtggccttggctctatcctcctccctgctggaacaggagcagcag
agcgagagggagtcggagaggcactcgcaaacaaagatggctgcctctcacatctccatg
aatccagcgttgaagtggaggccagacacaggtctgcaggtacatcatctgaccccctct
ctctcctctgctcatcttggtgcaggtaaggggcgcggaaagaggaaaaagggcgccatc
cctcgtcctcctccgctcctcctcgttcaggatgccgaggtggctctggcgaggctgcag
gaacgcgtttctgctctcctcctacgcagtcggcccccctctccccccaccccgacccgc
tgccccagcagtctgcctggctggagcggtgctgcccccctctggcaaaagagcacacta
cagggccgagcctccacctgtctgtctgatttctacactccagcgctcagagagttcatc
acgccttgggaatcagcaacgactgatgcagccacctccagcaccatcaacaagcctgcg
tcttctgtccaacctgtgggtgaaggaactcctgtcccagggaccagggcctccacgctg
ccctcctcctcctctcagacggctccctccaccccggggactgggcagctcctgatggac
ctgatggagctggctgaagacggtgtgaccctcacccagtatggtcacactgcttcgggc
cctgacaaagacaagcgtgccagtcagatcacaaacgttcgtctgagcggcttcgtggtg
gaggagtcggaggagcaggctgacctctgtgcgagcggcttcctgccagaaacgacacat
tcagaggccgctcgcagccgagcgacgaggacggtggatcagccaggggcagacaaagag
cgaagcagcctccgatcagtggcactatccagactggcatcagagctgagcagcatggtg
aacaacgctcagctcagtgacctgcagctccaggtggacagtggagagatctactttgct
cattccttcatggtgtatgctcgatgccccctgctggcagaaatggttcatgaaagtggg
tttggggtgcaggaggcaggcgtgcctgcagcccagagggtgctgatgaatgacgtcccg
ggacaggcggtgtttgctttactgcagtacctctacaccgcccgctgctccatccccgca
tcacttcggcctcacgtactggagctcgcgtccaggtttgacttgcaggagctacagcgg
ctttgcgagctccgccgggacgatgcagcgactcgggaagacgaggaagattacgcgaac
caggaggagaacgtgaacaaccaaacgcagcaggccctcacggaactgctccgctccatg
tgggacgaagaggacgaagacggcgagggcgtggatacggatggaggaagggacgaagag
ggagaactggaagaagatcatcaagccgatggcctcgcgtcaggtgacggggagatcctt
gaggagaaagtgaacgaggaagagctggaggagatctacgagtttgccgccacgcagaga
aagagagaggaggaggaagacagcaaggaggaggaggaggagaaggtagacagggatgaa
gatggagaagaaaagttgacaaaacccaaaagaagctcaaccggcttcagcggaaaaaac
ctgcagccggaccccagcctggaccgcagctacagtcgcctcttctccgactcctggggg
gtctacgaggaagaaggtccttcctccttaccttcaacttcccgcccggctaagacacac
acccctcaatcccaacaacaccagtcccctgataaacccgcctctaaactgtctggcaga
actttgcttcagtcttcagcgagcgcagttgacgagctttctctcagccctccacccagt
gcgtccaacctccctctcccgggtcagtcccctggtcagctgggtgactggagcggcggt
ggagacaagggaacagatggtctggctttgaagcgagacagccaaggacctcaacgtgtt
tgtgtccctctttctcccgaatcgcctcgggaaaagaaggaacccgagctcatagttttg
tccgactcgagcgaggaggaggaggaggagccacattcccgttctcgcgccgtccagaaa
ctgcagagctacacccaggtcaaacctcggccaaccctgagacctaatgaacccacgctg
gagaataaacagtccagtagcttagagttgagtcctgatgatccatctgcagcgccggtt
gacagtcctcagggtccctggtgtgagcaggatccagcagactgttctccagaagtgtcc
tggttgatcccatccacaccgctccagcccggaagaagcaccacgacgaccagctccact
cagactaaaagcagcatgtgcaggacacagctgttccctaaagggcgtacttcctcgccg
tcaccctctgttttctcttctcctgctttaccgttgaacaacagactgcaaacctccaac
agtccaaccagagtttctgcccgcgttggcccagcggaggacagcgttcccaagttaaac
ctggacgagacccatagctccagcttggatctcaacttttgttctaaaagaacaagtagt
tgtgatgtgagtaaagaaagaggagtttctgcttttgccccgtgccaacctaacgtctca
aagcaggatacacctgtccacatgcagccccatccttacagcagcactcctctgcacaca
gagctccacaaggccccccttcttcctgccagctccctgctccacagcaacctcgataag
agctggacacatccaggaagggatggggcgccatctgaaagcccggagaagacagagcta
gggagcttttatctttcccccatgtctgaaccttcagatccacccttgtcttcctctcat
gaagttcttcaaagttcacagagcccccgctcggttgagtccagcagtcacaacaacaca
gggcctgagctcaagagaagggggataagaaatgagaaggtaggagagattgagtgcgaa
aataaagccacgggtgatgaaggagggagggataaagcggaagctggagaggcagacgtt
gctgaatccagtttccagcagagcttcacggccacggacgagcctcccatagctttcaac
gactcgtggggtttcgacggctgtgtagacgtggaggccaacccaggctgcttcagcctg
aggctggaggacagcggcgcgtccagccagcaaggcgagcgcagcctgggacaaggagat
ccggccaggtcatcctcctctaccggccgccaaccttccccatcccgtcccggtgtccgt
ccattgaacagccacggcggtgtggaggcctcctctccacccaaaggccacagtacacca
ccccccgccagtgtacaggctcatacaggcctttccttccctcctccaccacctgacccc
cccacccacaccacgccagagaggatccacagcctcctggactccaaaatatgggacagc
tgggaggaggaggaggaggaggaagaggaggctcttcctctctctcagagggtgaaccct
gccgcccagctcaaaacaccagcatcatcgcacaataaaaggcgtcgcaccttggtggcc
atcacccccctgccccactactccgacatggacacaccagagctcaagaacaagctcacc
aggtttggtgttcggcctttaccgaagcgccagatgatcctcaaactgaaggagattcac
cagtacacccaccagctggtcagctccgactctgagggagaggcaccctcggcgggctgc
acagctcggacgaagcacccgcacaccagttcggaggttcctggcaacaggccggcctcc
tgcgcccagagagtgacttttaaagagcccagagcgcccgctgccgtctcccctctgaaa
ccccaccgagaggaggaggcagagctgctgtctgcctcgcagggctccaacacctcttcc
actgctgccagtgaagaatctgaaaggtccaacccagagctgtgcctctcctccgactca
gacagcgatggcggcatctctgcctcccaggcagtgaaccgcctccaggaccgcctccgg
gcggtgcgctccttgatcctgtctgactcccgactgtacagtcagatcctccagtaccag
cctctggtcttgtcccagctccaggagcgactcaaagcagcagggatccgcctgggtgcc
gccaaactggtggactacctggactctcagtgcatcaccttcaccacggccaaaccgggc
caatcggcatccagccgcaggcggggcaagaggacagccaaggggacaaaagcagcacgg
gacagaggagtgggcaggaaaagagctgttacagccatgatttaa
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integrated database retrieval system
