Sander lucioperca (pikeperch): 116042750
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Entry
116042750 CDS
T07345
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116042750 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sluc03021
]
116042750 (taf5)
03036 Chromosome and associated proteins [BR:
sluc03036
]
116042750 (taf5)
Transcription machinery [BR:
sluc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
116042750 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
116042750 (taf5)
Chromosome and associated proteins [BR:
sluc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
116042750 (taf5)
STAGA complex
116042750 (taf5)
TFTC complex
116042750 (taf5)
SAGA complex
116042750 (taf5)
SLIK complex
116042750 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
WD40_MABP1-WDR62_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_Nup120_160
WD_LRWD1
PEP5_VPS11_N
Beta-prop_WDR35_TULP_N
PROPPIN
CDK5RAP3
VPS8_N
LisH_TPL
LisH_PAC1
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
116042750
NCBI-ProteinID:
XP_031144957
Ensembl:
ENSSLUG00000007908
LinkDB
All DBs
Position
4:13397895..13404361
Genome browser
AA seq
749 aa
AA seq
DB search
MAAVQGGLADTNEEKDIKTEPSSDGFGNNNANDGRVLSTSPGSSASAGINKSATGAPEDQ
QTLLAVLQFLRKNKLTESVEILRREAGLPEDSPELKGSDSSGAGSGGAAGSGDKEGGDAS
SLLSRVTISSSAVAQAPTKAAGEDQPDVNVVLSAYNQQGDPPLYQVYYSGLKKFIESVLD
CHRAELSQLFYPLFVHMYLELVYNNHESEAKAFFEKFSGDQECYYEDDLRVLSSLSKREH
MRGNETLMDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKG
QIDAMSGSLAGEGKREANKAKVYYGLLKEPEIELPLDDEDEEAENEEGKPKKKKPKKDSM
GSKSKKQDPNAPSQTRIPLPELKDSDKLDKIMYMKEATKRIRLGPDNLPSICFYSFLNAY
QGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLERIMDE
KTASESKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWD
THFSPHGYYFVSGGHDRVARLWATDHYQPLRMFSGHLADVTCTRFHPNSNYVATGSSDRT
IRLWDVLNGNCVRIFTGHKGPIHALAFSPNGKFLASGATDGRVLLWDIGHGLMIGELKGH
TDTIYSLRFSRDGEILASGSMDNTVRLWDAMKAFDDLETDDFTAATGHVHLQDNSQELLL
GTYMSKSTPVIHLHFTRRNLLLATGAYNP
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtacaaggtggtctggccgacacgaacgaagaaaaagacataaaaacagaa
ccatcaagcgatggctttggaaataataatgcaaacgacggaagagtgctctctacgtcc
cccggctccagtgcttcggctggaattaataaatctgcgacaggagccccggaggaccag
cagacgctgctggcagtcctgcaattcctcaggaagaacaaactgaccgagtccgtcgaa
attttgcgtcgtgaagcgggattaccggaggattcaccggaactgaaggggagtgattcc
tccggtgcaggctcggggggtgctgcgggcagtggggacaaagaaggcggggatgcgagc
tctcttctcagccgggtgaccatctcatcctcggctgtagctcaggcgccaactaaagct
gctggggaggatcagccagatgtcaacgtggtgctgtcagcttacaaccagcagggagac
cctcctctgtaccaggtttactacagcggcctgaagaagttcatagaatcggttttggac
tgtcaccgagcggagctgtcacagctcttctacccgctgtttgttcacatgtatctggaa
ctggtgtacaacaatcacgagagtgaggccaaggcgttctttgagaagttcagtggcgat
caagagtgttactacgaagacgacttgcgtgttttgtccagcctgtccaagagggagcac
atgagaggcaacgagaccctgatggacttccgcaccagcaagttcgtcctgcgtatctcc
cgtgactcttaccagctgctgaagaggcacctgcaggagcgtcagaacaaccagatctgg
aatatcatacaagagcacctctacattgacatctttgatggcatgccacgcagcaagggc
cagattgatgccatgtccggcagcttggcaggagagggcaagcgagaggccaataaggct
aaggtttactatggattgctgaaggaaccggaaattgagctgcctcttgatgatgaggac
gaggaggcagagaatgaggagggtaaacccaagaagaagaaacccaaaaaggacagcatg
ggctccaagagcaagaagcaggatcctaatgcaccttctcaaactaggatacctcttcca
gaactgaaggattcagacaagctggacaagatcatgtacatgaaggaggccaccaagagg
atccgcctgggaccagataacctgccgtccatctgcttctacagttttctcaatgcttac
cagggtctgactgcagtggacttcacagatgactccagcctgatcgcgggaggcttcgct
gactccacagtacgggtgtggagtgtcacaccgaaaaagctccgcaaggtcaagtctgca
gcagacttgaatctgatcgacaaagagtcagacgatgtgctggagaggatcatggatgag
aagacggccagtgagtcaaagatcctctatggacacagtggcccggtgtatggcatcagc
ttcagcccagacagaaactacttgttgtcaagttctgaagatggtacagtcaggctatgg
agtctccaaacatttacttgtctggtgggctacaaaggccacaactacccagtgtgggac
acccacttttccccccatgggtactattttgtctccgggggacatgaccgagttgcccgt
ctgtgggctacagatcactaccagcctctgcggatgttttctggtcacctagctgatgtc
acttgcacccgcttccaccccaactctaattatgtggccacagggtcttctgatcgcacc
atccggctctgggatgtcctgaacggaaactgcgtccgcatcttcaccggtcacaagggt
cctatccatgcgctggccttttctcccaatgggaagttcttggcttcaggagccactgat
ggcagagttcttctgtgggacattggccatgggctgatgattggagagcttaaaggccac
acagataccatctactcgctccggttcagcagagacggagagatccttgcctccggatca
atggacaacacggttcgtctgtgggatgcaatgaaagcttttgatgatttagagaccgat
gatttcacagcagctacaggacacgtccatctacaagataactcccaggagcttctgctg
ggcacctacatgtctaaatctacacctgttatacaccttcacttcactcgcagaaacctg
ctgctggccactggggcttacaatccatga
DBGET
integrated database retrieval system
