Sander lucioperca (pikeperch): 116042936
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Entry
116042936 CDS
T07345
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116042936 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116042936 (parn)
Enzymes [BR:
sluc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
116042936 (parn)
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116042936 (parn)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
RRM_R3HCC1L
R3H
RRM_Thc1
Motif
Other DBs
NCBI-GeneID:
116042936
NCBI-ProteinID:
XP_031145278
Ensembl:
ENSSLUG00000000962
UniProt:
A0A8D0CMU2
LinkDB
All DBs
Position
4:15592243..15602271
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AA seq
675 aa
AA seq
DB search
MEVTRQNYKDSLNTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKH
SMDFLLFQFGLCTFTYDQTKSKYITKSFNFYVFPKPFNRTSPDLKFICQSSSIDFLASQG
FDFNKVFCHGIPYLNQEEEAQLREQTEERRNQHANGVGTPSYISPSSKGPAHVPEEHKDY
INRVIEKVEALFTNSEKTLDLDPCTGFQRKLIYQTLNWKFPKGLHVETVETEKKERYIQV
SKVDDEERKRREQQKQEREQEELNDAVGFSRVIHAISKSAKLVVGHNMLLDVMHTIHQFY
CPLPEDLQDFKEITMCVFPRILDTKLMASTQPFKELITNTSLAELEKQLKESPFKSPQVE
TAEGFPGYDTAQGQLHEAGYDAYITGLCFISMANYLGSFLTPPKAYISAHSKLIEPFFNK
LFLMRIIDIPYLNITGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQTDQVQIAMNTSRYAESYRIQTYAEYIQGKQQDKEKLNQTPKSWGEDGWMKPHYT
SPTCAGFGYPRGLRKRSISPAQGEQGAGDSPITDGWSHCSYPESTGSKKMKTDDKSGQAI
ESKTSEGWLKTADASDSAGSSPVPEEEEERSPEGNNAEGTVTWQQVHGKRGQKNKKKKSK
GAKSTTSLFEVPEVW
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacacgccaaaattataaagacagtttaaacacggtgtacagcgcgatagag
gaggctgacttccttgccatcgatggagaattttcagggataagcgacggtcctaatgtc
agtgcactcaccaacggactggacacaccggaggagcgatacacgaagcttaaaaagcac
tcaatggactttttgctgttccagtttggattatgtacgttcacgtacgaccagacaaag
tcaaagtatatcacaaagtcttttaatttttatgtattcccgaaaccgttcaacaggaca
tcccctgacttaaagttcatctgtcaaagttccagtattgacttcctggctagtcaggga
tttgacttcaacaaggtgttctgtcatggaatcccatatctaaaccaagaagaggaagcc
cagctgagggagcagacagaggagaggagaaatcaacatgctaacggtgtagggacacca
tcctacatctccccctcctccaaaggccctgcacacgtacctgaggagcataaagactac
atcaacagggtgatagagaaggttgaggccctcttcactaactcggagaagactttggac
ttggacccatgtactgggtttcagagaaagctgatataccagacactgaactggaagttt
cccaaggggcttcatgtggaaactgtggaaacagaaaagaaggagcgctacatccaggtc
agcaaagtagatgatgaggagaggaagaggagggaacaacagaaacaagagagagagcag
gaggagctaaatgatgctgttggcttctccagggtcatccacgccatctctaaatctgct
aaacttgtggttggtcacaacatgctgttggatgtgatgcacaccatccaccagttctac
tgccctctgccagaggatcttcaagactttaaagagatcacaatgtgtgtcttcccaaga
attctggacacaaagttgatggcttccactcagccctttaaggagctgatcactaacaca
tctctggcagagttggagaaacagctgaaggagagccccttcaagtcaccacaagttgaa
acggcagaggggtttcccggttatgacacagcccagggacagctccacgaggccgggtac
gatgcctacatcactggcctctgtttcatctcaatggccaactacctgggctctttcttg
actccacccaaagcgtacatctctgctcactccaaactaattgagcctttcttcaacaag
cttttcctgatgaggataatagatattccctacctcaacatcacaggaccagatttgcaa
cctaaaagagaccacgtcctgtacgtcactttcccaaaagaatggaagactagtgacctc
taccagctctttagtgccttcggaaacatccaggtttcctggatagacgacacgtcagca
tttgtgtccctaagtcagacggaccaggtacagatagccatgaacaccagccgctacgca
gagagttacaggatccagacgtatgcggagtacatccagggtaagcagcaggacaaggag
aagctcaaccagacgcccaaatcttggggagaggacggctggatgaaacctcactacacc
tcccctacttgtgctggtttcggatatcccaggggtttgaggaaacgcagcatcagtccc
gctcagggagagcagggggccggagactctccaattacagatggctggagtcactgctca
tacccggaaagcacaggcagcaagaagatgaaaactgatgacaaaagtggacaagctatc
gagagcaagacctcagaaggatggctaaagactgcagatgcatcagattcagcggggtcc
agtccagtccctgaggaggaggaggagcgaagtcctgaaggcaataatgctgaggggacg
gtcacctggcaacaagtccatgggaagagaggtcaaaagaacaagaaaaagaagtccaaa
ggggctaaatctacaacatcgctgtttgaggtcccggaagtctggtag
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