KEGG   Sander lucioperca (pikeperch): 116042982
Entry
116042982         CDS       T07345                                 
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4 isoform X1
  KO
K07573  exosome complex component CSL4
Organism
sluc  Sander lucioperca (pikeperch)
Pathway
sluc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sluc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    116042982 (exosc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sluc03019]
    116042982 (exosc1)
Messenger RNA biogenesis [BR:sluc03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     116042982 (exosc1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     116042982 (exosc1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1
Other DBs
NCBI-GeneID: 116042982
NCBI-ProteinID: XP_031145327
Ensembl: ENSSLUG00000000138
UniProt: A0A8C9WW37
LinkDB
Position
4:12252971..12259431
AA seq 194 aa
MSPMKLCVPGDKLCSVEDCIPGTGVYLRHGYIYSSLAGYVLKKNEGEELPVISVVRETET
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVEIYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGVQMVPISWCEMQCPRTHSKE
FRKVARVQPEYLQA
NT seq 585 nt   +upstreamnt  +downstreamnt
atgtcgcccatgaagctgtgtgttccaggtgacaagctatgcagtgtagaagactgtatt
cccggcacaggagtatatcttcggcacggctacatttattcttccctagcaggctacgtg
ctcaagaaaaacgagggagaggagttaccagtgatctcagtggtgagggaaacagaaacg
caactactacccgatgtaggagcaatagtcacctgtaaggtgaccagtatcaaccccagg
ttcgccaaggtccacatcctttatgtaggctcaacaccactgaaggaccgcttcagagga
acaatcagaaaagaagatgtgcgtgcaacagagaaagacaaggtggaaatatacaaaagc
ttcagacctggcgacatcgtcttggcgaaagtgatttcccttggtgacgtgcagtctaac
tacctgttgacaacagcagagaacgaactgggggtggtggtggcacacagtgaagcaggt
gtccagatggttcccatcagctggtgtgagatgcagtgcccacgtacgcacagcaaagag
tttcgcaaagtggcccgcgtgcagccggagtacctgcaggcatga

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