Sander lucioperca (pikeperch): 116043037
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Entry
116043037 CDS
T07345
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116043037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sluc03041
]
116043037
03009 Ribosome biogenesis [BR:
sluc03009
]
116043037
Enzymes [BR:
sluc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116043037
Spliceosome [BR:
sluc03041
]
Complex A
U1 snRNP components
U1 related factors
116043037
Complex B
116043037
Ribosome biogenesis [BR:
sluc03009
]
Eukaryotic type
Pre-60S particles
Helicases
116043037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
116043037
NCBI-ProteinID:
XP_031145396
Ensembl:
ENSSLUG00000014125
LinkDB
All DBs
Position
4:complement(8444668..8455713)
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AA seq
635 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGGPPRFGGGGGGGNRSGPPPGKFGNPGERLRKKHWNLDELPKFQ
KNFYQEHTDATRRPPQEVEQYRRSKEVTVKGRDCPKPIIKFHEAAFPSYVMEVIVKQNWT
DPTPIQSQGWPVALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAP
TRELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG
KTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLK
DYIQINIGALQLSANHNILQIVDVCNDMEKEDKLIRLLEEIMSEKENKTIIFVETKRRCD
ELTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFVIN
YDYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLIQMA
EDRGGRGRGGRGGYKDDRRDRYSGGGRSNFGGSSYRDRDSDRGFSNGPKSAFGGNKAQNG
GSYGGNGGNSSVSYGNNNYSNSNGQGNFGTPGNQVGAFGNQSFQGPPQFGGMQRVAQNGM
NHPPFPFNSQPPPQAQQPPPPPPMVPYPMPPPFPQ
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttcagacagggatcgtggcagagatagagggtatggtggaggaccccct
cgttttggtggtggtggtggaggaggcaataggagcggaccccccccaggaaagtttggc
aaccctggtgagaggctgcgaaagaagcactggaaccttgacgagcttccaaagtttcaa
aagaatttctaccaggaacatacagatgccactcgcagaccacctcaagaggttgaacag
taccgaagaagcaaagaagttacagtcaaaggccgggattgccccaaaccaattataaaa
ttccatgaagctgcatttccaagctacgtcatggaagttattgtcaaacagaactggact
gatccaactccgattcagtctcaggggtggccagttgccctgagtggcaaagacatggtt
ggcatcgctcaaactgggtctgggaaaacccttgcataccttcttcctgcaattgtgcac
atccaacatcagccattcttggaacatggagatggacctatttgcttggtgctggcgcca
acccgtgagctggctcagcaggtgcaacaagtagctgctgaatacggccgggcctcccgt
ctcaagagcacttgcatctacggtggtgcgcccaaaggaccccaaatcagggaccttgag
aggggtgttgagatttgcatcgctaccccaggccgtctcattgacttcctggagtgtggt
aagactaatttgcgtcgttgcacctatctggtgctggatgaagcagaccgcatgctggac
atgggatttgaacctcagatccgcaagatagtggaacaaattcggccagaccgacagacc
ctgatgtggagcgccacctggcctaaggaagttcgccagctggctgaagacttcttgaag
gactacatccagatcaacattggcgcgctgcagctcagtgccaaccacaacatcctgcag
atagttgatgtttgcaatgacatggagaaggaggacaaactgatccgtttgctagaggag
ataatgagtgaaaaggagaacaaaaccattatttttgtggagaccaaaaggcgttgtgat
gagctcaccaggaggatgagaagagatgggtggccagcaatgggaattcatggagacaag
agccagcaggagagggactgggtccttaatgagttcagatatggcaaagcaccaattctc
atcgctacagatgtggcctcccgtggcttggatgtggaggatgtgaaatttgtcatcaat
tatgactaccctaactcctctgaggattatatccaccgaattggacgcacagcccgaagt
caaaaaacgggcacagcctacaccttcttcacccccaacaacatgaaacaagccagtgac
ctgatctctgtgctccgcgaggccaaccaggccattaaccccaagctgatccagatggca
gaggacagaggaggtcgtggaagggggggaagaggtggctacaaggatgaccgtcgggat
aggtattctgggggtgggagaagcaactttggcggtagtagctacagggacagggacagt
gatagagggtttagcaatgggccaaagagtgcctttggtggtaataaggcccagaatggt
ggcagctatggaggtaatggtggtaactctagtgttagctatggcaacaacaattatagc
aacagcaatggacagggtaattttggtactccaggaaaccaggtgggtgccttcggtaac
caaagcttccagggcccccctcagtttgggggcatgcagagggtcgctcagaatggcatg
aaccacccaccattcccattcaactctcagccaccaccacaggcccaacagccaccaccc
ccaccaccaatggtgccctaccccatgccaccacccttcccacaatag
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