Sander lucioperca (pikeperch): 116044720
Help
Entry
116044720 CDS
T07345
Symbol
ddx3xb
Name
(RefSeq) DEAD-box helicase 3 X-linked b isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
116044720 (ddx3xb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116044720 (ddx3xb)
03041 Spliceosome [BR:
sluc03041
]
116044720 (ddx3xb)
03036 Chromosome and associated proteins [BR:
sluc03036
]
116044720 (ddx3xb)
Enzymes [BR:
sluc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116044720 (ddx3xb)
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
116044720 (ddx3xb)
mRNA cycle factors
Common to processing body (P body) and stress granule
116044720 (ddx3xb)
Spliceosome [BR:
sluc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
116044720 (ddx3xb)
Chromosome and associated proteins [BR:
sluc03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
116044720 (ddx3xb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
116044720
NCBI-ProteinID:
XP_031147995
Ensembl:
ENSSLUG00000013681
LinkDB
All DBs
Position
24:8468080..8488343
Genome browser
AA seq
739 aa
AA seq
DB search
MSHVAVENVHGLEQQLAVLDLSAADGQGGLPNRRYIPPHLRNDASKNAGNAFAAGRPGGY
TIAPAANYGWDGGRNNFVNGYHDNRMAGNTFNRGPPRMERGRGGVGGGYRGNRGGAFNPI
NPAQPMAFGGYENKDAGGWNTAKDAYGSFGNSRGKSAFFNDRGNANRGRFDHGGFGGGGG
GGGNNRWVEESREEGDWSKQTPRNERLEHELFAASNTGINFEKYDDIPVEATGQNCPHHI
ESFQDVDMGEIVMGNIGLSRYTRPTPVQKYAIPIVKSKRDLMACAQTGSGKTAAFLLPIL
SQIYTDGPGEALNAAKASGQENGKYGRRKHFPISLVLAPTRELALQIYDEARKFSYRSRV
RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDM
GFEPQIRRIVEQDTMPHKGIRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENI
TQKVVWVEESDKRSFLLDLLSATVIPSEVQDNTGDNIEKPGKDSLTLVFVETKKGADALE
DFLYREGYACTSIHGDRSQRDREEALSQFRSGKCPILVATAVAARGLDISNVKHVINFDL
PSDIEEYVHRIGRTGRVGNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESLAYEH
QHKSSNRGRSKRFAGGFGARDYRQTAAGGTAGGFGGRGGRNQAGHGGTRGFGGGGFGNFY
TSDGYGGNYSHSQVDWWGN
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgaaaatgtccacggtctagagcagcagctcgctgtcctagac
ttaagtgcggcagacggacaaggtggactacctaaccggcgatatattcctccacattta
cggaacgacgcttccaaaaatgcaggaaatgcctttgctgctggtcgacctggtggctac
accatagcgcccgcagccaactatggttgggatggggggcgcaacaactttgtcaatggc
taccatgacaaccgcatggctggcaacacgtttaaccgtggcccgcctcgtatggagcgg
ggccgaggtggcgtcggaggaggttaccgtggcaacaggggcggagccttcaaccccatc
aacccagcacagccaatggccttcggtggctatgaaaataaagacgcgggcggctggaac
actgctaaagacgcctatggcagttttggcaacagccgagggaaatctgcgttcttcaat
gacagaggcaatgctaacagagggcggtttgaccatggaggatttggtggtggtggagga
ggaggaggaaacaaccgttgggtggaggagtccagggaagagggagactggtccaaacaa
acgccacgtaacgaacgccttgaacatgagttgttcgcggccagtaacaccggaattaac
tttgagaaatacgatgacattcctgttgaggccactggacagaactgccctcaccacatc
gaaagtttccaagatgtggacatgggtgagattgtcatgggtaacattggtctgagtcgc
tataccagaccgacccctgtccagaaatatgccattcctattgtcaagtcaaagcgagac
ctcatggcctgcgcacagacaggttctgggaagactgcagcgttcctgctgccgattctc
agccagatctacaccgatggaccaggagaagctcttaatgcagctaaagcatctggacag
gagaatggaaagtacgggcgtcgtaagcacttccccatctcactggtattggctccaacc
agagaactggcactgcagatatatgatgaagccaggaagttttcctaccgctccagagtg
cgtccctgtgttgtgtatggaggagcagacattggccagcagataagagatctggaaaga
ggctgccacctgctggtggccacacctggaagactggtggacatgatggagcggggcaag
attggactagactactgcaactacctggtcctggatgaggcagatcgtatgttggacatg
ggatttgaaccacagataaggcgcatcgttgaacaggacaccatgccgcacaaaggcatc
cgacaaaccatgatgttcagcgcaacctttcctaaagagatccagatcctggccagggat
ttcctggaggactacatcttcctggcagtgggcagagtgggttccacctcagagaacatc
actcagaaggttgtgtgggtggaggagagcgataagcggtctttcctcctggacctgctc
agtgctacagtcatccccagcgaggtacaggacaatactggagacaacatagagaaacct
ggtaaggactcgttgactctggtttttgtggagaccaagaaaggcgcggacgccttggag
gacttcctgtatcgggagggctacgcctgcaccagtatccatggcgaccgctcccagaga
gaccgagaggaagccctgagccagttcagatcaggaaaatgccccattctggtggccaca
gcggtagcagctcggggtctggacatctccaacgtgaaacatgttattaactttgacctg
cccagcgacatagaggagtatgtccaccgtattggacgtacaggacgtgtcggaaacctg
gggcttgccacatcattctttaatgataaaaatgggaacataactaaggacctgctggac
attctggtagaggccaaacaagaagtcccctcatggcttgagagcctggcctatgagcac
cagcataagagcagcaacagaggacgctctaagaggttcgctggtggttttggagcgcgt
gattatcgccagacggctgccggaggcaccgctggagggtttggaggacgtggaggtcgc
aaccaggcaggacacggaggaacccgcgggtttggaggaggtggttttggtaacttctac
accagcgacggctacggagggaactactcacactctcaagtagactggtggggcaactag
DBGET
integrated database retrieval system
