Sander lucioperca (pikeperch): 116046209
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Entry
116046209 CDS
T07345
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03013
Nucleocytoplasmic transport
sluc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116046209 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
116046209 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116046209 (thoc1)
03041 Spliceosome [BR:
sluc03041
]
116046209 (thoc1)
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
116046209 (thoc1)
Spliceosome [BR:
sluc03041
]
Complex C
Other components
EJC/TREX
116046209 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116046209 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
116046209
NCBI-ProteinID:
XP_031150331
Ensembl:
ENSSLUG00000018362
UniProt:
A0A8D0D686
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All DBs
Position
9:complement(8915641..8924401)
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AA seq
654 aa
AA seq
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MSPPLFNFVDAKDKFTASARQALVGKTSKPLIHAFNQFPGNEAEKKTTFDQALRGVLGDQ
IVEQKASCDEYLSLIYLSISAVTEGICSATTPFLLLGDVLDCLPLDQCDKIFSFVEENVS
TWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQF
NLENITVFNKNEQESTLGQKHTEEKEDGMEVEEGEMGEDEAPAPCSIPIDYNLYRKFWTL
QDYFRNPVQCYDKFCWMTFLKFSDETLAVFKSYKLDDMQASKRKLEEMRASGGEHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNCVLNDDQTTWIEETTKLV
YQLLREIPPDGDQFATMVEHILNTEESWNSWKNEGCSSFVKERPVDDKPKRPTRKRQAPE
DFLGKGPDRKIFMGNDELTRLWNLNQDNMEACKSDSREFMPSLDEFFAEAIEQADPANMV
EEEYKVVRNPNYGWRALRLLSRRSPHFFQPTNQKFKSLADYLDSMVSKLAKELPKDIPSE
EIKTGEDDDDDNGDNLLKDSNDSPSIQSKMVTNQQMDDIAAKLGTQWKMLASHLEMKAAE
LREIETDSEDVDMQAKLLLVAWQDREGSQATVESLVTALNAAGFSQIADNLNEA
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgcccttattcaattttgtcgatgctaaagacaaatttacggcgtctgccaga
caagccctagttggtaaaaccagcaaacctttgatacatgctttcaaccagttcccaggg
aatgaggcagaaaaaaagaccacatttgaccaggcgctgaggggtgttcttggtgatcag
attgttgagcagaaggcgagctgcgatgaatacttgtctctcatctacctgagtatttct
gcagttacagaaggtatctgttctgctacaactccttttcttctgcttggagatgtactg
gactgtcttcctctcgaccaatgtgacaaaatattctcttttgtcgaggagaatgtctcc
acctggaaatcgaactctttttacactgctgggaagaactacttgttgaggatgtgtaat
gatcttttaaggaggctgtccaaatcccagaatactgtattctgtgggagaatccagctt
ttcctggcacgtctcttccctctgtccgaaaaatcaggtctcaatctgcagagccagttt
aatctggagaatataactgtgttcaacaaaaatgaacaagaaagcactctgggccagaag
cacacagaagaaaaggaagatggcatggaggtggaagaaggagaaatgggagaggatgaa
gctcctgcaccgtgttccattccgattgactacaacttgtacagaaagttctggacactg
caggactacttcagaaaccctgtgcagtgttacgataaattctgttggatgacattcctt
aagttctcagatgagactttggcagtgttcaagagctataaactggatgacatgcaggcc
tctaagagaaagctggaggagatgagagcatctggaggagagcatgtctactttgccaag
tttctaacaagtgagaagctcatggacttgcagctcagcgacagcaacttcaggcggcac
attttactgcagtacctcatcctcttccagtacctgaagggacaggtcaagttcaaaagc
tccaactgtgttctgaacgatgaccagactacatggattgaagagacaactaaactggtt
tatcagctgctgagagagatccctcctgatggagaccagtttgccaccatggttgagcat
attctcaacacagaggagagctggaatagctggaaaaatgagggctgttcgagctttgtg
aaagagaggccagtagatgacaaacccaaaagacccaccaggaaaagacaagctccagaa
gacttccttggaaaagggccggaccgcaagattttcatgggaaatgatgagttgactcga
ctgtggaacctgaaccaggacaacatggaggcctgcaagtcagacagcagggagttcatg
ccatcactggacgaattctttgcggaagccattgaacaggccgaccctgctaacatggtg
gaggaagagtacaaggttgtgcggaacccaaactacggctggcgtgctctaaggctgctg
tccaggagaagtccacacttctttcaaccaactaaccagaagttcaagagcctggcagac
tacctagacagcatggtcagcaaactggccaaagaattgccgaaggatattccctccgaa
gagatcaagacaggagaagatgatgacgacgataatggagacaatcttctcaaagacagc
aatgacagtccgagcatacagagcaagatggtgacaaaccagcagatggatgacatagca
gccaaactgggcacgcagtggaagatgctggcatcccatttggagatgaaggcagcagag
ttgcgagagattgaaacagacagtgaagatgttgacatgcaggccaaactgctgcttgta
gcctggcaggatagagagggatcacaagccactgtggagagcctggtcacagctcttaat
gctgcaggattctcccagattgcagacaacctcaatgaggcttaa
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