Sander lucioperca (pikeperch): 116046377
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Entry
116046377 CDS
T07345
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X2
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116046377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116046377
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116046377
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116046377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
7tm_6
Motif
Other DBs
NCBI-GeneID:
116046377
NCBI-ProteinID:
XP_031150585
Ensembl:
ENSSLUG00000005216
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All DBs
Position
16:complement(31477067..31515353)
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AA seq
942 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKNQKRIYCQLHNAANANQKEKYEADLKKEI
KKLQRLRDQIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQ
KVDPAQKEKEEVGTWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEDRIEELKAFIE
KHRHHIRMLETILRMLDNDSIQVDAIRKIKDDVEYYLDSSQDPDFEENEFLYDDLDLEEI
PQALIATSPPGNSNLEDEIFQNSSSTPTSTTSSSPIPPSPATCTTENSEDDKKRGRSTDS
EVGQSPVKNGNPSSSLSSSSSSSSSSSSSSSCSSSSSIPGLTSSSLVSMATITGGGLSGS
GANSLHGSLGGLLSNTSAGSYSSATQQQPHPSAQQQQSKHLAGSSSSAPISIPNSSTNSH
LVSSAPSPPNAITQGLFTSSSQAQSLSGPAPTSNSLGLSLGLSLGKGGMSGCITTSPMSG
SLGLSGMPASLSSMASLLSGSTPAPYAQAAASGAIGSGLPGSLGGIGISPTTTHSAVGSI
GSGSITVGGPTSSTGGLLGPAPGLTNVGSGMLGLGSGQSGMQGSSLVSLSPVGGLAPGSG
VGVIGSNGGSSGSAGSGVVGGNLSLSVRPPSQQKQNGSTSYSAVVADSTTDSALTSASQS
QSSQPSSLTSAANQPKDTGSSLLGSICLSSSSPSPAFYSEAKAVSGGSLLNGPLSYSQSS
DSMKTQEPLSSLKSMAERAALSSGMEGDVSSLHLTPDIFPSSTTAPSGPPSAPQLSLSEV
SIPPSLGVCPLGPVPLSKDQLYQQAMEEAAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQ
VPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEE
PKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaaggaaacttcaaggggaaatagatcgatgtctgaaaaaagtagcggaa
ggagtcgaacagtttgaagacatttggcaaaagaatcagaaaaggatttattgccaactt
cacaatgcagccaacgccaaccagaaagagaaatatgaagcggacctcaagaaagagatt
aaaaagctacagcgtcttcgagaccagatcaagacgtgggtggcatccaacgagatcaaa
gacaaaaggcagctagtagagaaccgcaaactcatagaaacgcaaatggagcggttcaaa
atagtggagagagaaaccaagacgaaggcgtactcaaaagaaggtttgggtctggcccaa
aaggtggacccggcccagaaagagaaggaggaggtcggcacttggctaacgaacacgatc
gacacgttgaacatgcaggtggaccagtttgagagcgaggtggagtctctttcagtgcag
acgaggaaaaagaaaggagacaaagaggaccggattgaggagctgaaggcattcatcgaa
aagcatcggcaccacatccggatgctggagaccatcctgaggatgctggacaacgactcc
atacaggtggacgccatcaggaagatcaaggacgatgtggagtattatctggactcgtcg
caggatccagactttgaggagaatgagtttctgtacgacgacctggacctggaagaaatc
cctcaggcactgatcgccacctccccgccgggaaactccaacttggaggacgagatcttc
cagaactccagcagcacgcccacctccaccacctcatcttcacccatccccccttcacct
gccacttgcactacggagaactcagaagatgacaagaagaggggacgttcgacagacagc
gaagtcggtcagtcacctgtgaagaacgggaacccctcttcctcgttatcctcttcctcc
tcctcctcgtcttcctcctcctcatcctcctcctgctcttcttcttcctccatcccgggc
ctgacctcatcctcgctcgtctctatggcgaccatcacggggggaggactcagcggctcc
ggggccaacagtcttcacggcagcttggggggtctcctctccaacacttcggccggcagc
tacagcagcgccacccagcagcagccgcatccgtcggcgcagcagcagcagtccaaacac
ttagctggctcctcctcctcggctcctatctccatccccaactcctccaccaacagccac
ctggtgtcctccgccccttccccccccaacgccatcacgcaggggctcttcacctccagc
tcccaggcccagtctctgtcggggcccgcaccgacctccaacagcctcggcctcagcctc
ggcctctcgctggggaaaggcggcatgtccggctgcatcaccaccagccccatgtccggg
agcctcggcctatcagggatgccggcgtccctgagcagcatggcgagcctcctttccggc
tccaccccggcaccctacgcccaggcagccgcgtcgggagcgatcggctccggcctccca
ggctccctgggcggcatcggcatcagccccacgacgacccacagcgcagtgggctccatc
ggcagcgggagcatcacggtcggcgggccgacgtcctcgacgggaggtctgctgggcccg
gcgccggggttgaccaacgtcggctctggcatgctgggtttgggttctggtcagtcgggg
atgcaggggtcctccctggtgtccctgagcccagtcggaggcttagcgccgggtagcgga
gtgggagtcatcgggagcaacggaggcagctctggatcagcagggagcggagtggtggga
gggaacctgtcgctctccgtcaggccgccgagccaacagaagcagaacggtagcaccagt
tacagcgctgtggtagcagacagcacaacagactccgccctcaccagtgccagccaatca
caaagcagccaaccctcgtctttgacctccgcagccaatcagcctaaggacactggttcc
agtttactgggctctatttgtctgtcgtccagctccccgtcgccggccttctacagcgag
gctaaagcggtgagcggcggcagcctgctgaacgggccgctgtcctactcgcagtcctcc
gacagcatgaagacccaggagcctctgagcagcctgaagtccatggccgagcgagctgca
ctcagctcagggatggagggtgacgtgtcctccctgcacctcaccccagacatcttcccc
agcagcactacggccccctcgggcccgccgtcggcacctcagctctcgctgtcagaggtc
agcatccccccgtcactgggcgtctgcccgctggggccggttcccctgtccaaagaccag
ctctaccaacaggccatggaagaggcggcgtggacgcacatgccccacccatctgactcc
gagaggatcaggcagtacctgatgaggaacccgtgccccaccctgcctttccaccaccag
gtgccaccgccccactcggacactgtagagttttaccagaggctttccaccgaaaccctc
ttcttcatcttttactacctggagggcacaaaggcccagtatctggcagcgaaagccctg
aagaagcagtcatggaggttccacacaaagtacatgatgtggtttcagaggcacgaagaa
cccaagaccatcacggatgagtttgagcagggaacatacatttactttgactatgagaaa
tggggccagcggaagaaggaaggcttcacgtttgagtaccggtacctagaagaccgagac
ctccagtga
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