Sander lucioperca (pikeperch): 116046826
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Entry
116046826 CDS
T07345
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc04382
Cornified envelope formation
sluc04510
Focal adhesion
sluc04512
ECM-receptor interaction
sluc04518
Integrin signaling
sluc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116046826 (col4a2)
04518 Integrin signaling
116046826 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116046826 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116046826 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
116046826 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sluc04147
]
116046826 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
sluc00536
]
116046826 (col4a2)
Exosome [BR:
sluc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116046826 (col4a2)
Glycosaminoglycan binding proteins [BR:
sluc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116046826 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116046826
NCBI-ProteinID:
XP_031151129
LinkDB
All DBs
Position
8:complement(18544035..18622856)
Genome browser
AA seq
1677 aa
AA seq
DB search
MSGTMQGQHNRGLKNLRLLLLCLSIAILASGVHAGGKKDSGPCGGRDCSGGCQCFPEKGA
RGHPGPLGPQGSQGPPGRPGDPGIQGPKGQKGDRGRSGIIGPKGNVGMTGVPGFSGSDGI
PGHPGQAGPRGRPGADGCNGTHGESGLMGQPGYNGAPGFPGQPGWKGQKGDSLELTVYME
RFRGDPGTPGPNGRFGPQGNPGHQGHIGFPGPKGPPGPPGPRGPKGTMTKVLKGLRGDDG
EAGPPGLPGNSSAHQQIKPPYGLPGPRGEKGLKGNIGDPADNKGETGVMGFPGSRGPSGA
DGRPGPRGDFGEQGPKGRDGPKGVRGDPGELISSGNWPWISGAGPTGPPGEQGPQGERGP
VGNQGFPGPPGRPASETQQQVWDFMGPFGMKGEPGDKGQPGDPGRPADRAGPPGSSGRPG
VRGPPGPKGTWAEFFKGAPGGRGRPGNAGYKGLKGDHGLCECTIVNSPPGLPGPAGDRGD
AGMTGEFGQEGDLGEPGPQGDNGFPGPPGLSGVLGQKGRKGEPSVASQKGYPGDPGDHGR
DGETGAFGAPGQNGLPGIPGSRGLPGEGARGEPGDKGFPGRPGRPGAPGLSGEEGKVLGG
VKGQRGLPGDDGHAGYNGVPGTPGTPGGCSPTGDGGQVDVTGPCDAVPGPPGLPGPPGPS
GLPGLPGQPGQKGPQGPHGAHGEKGEKGDQGMGGHPGPPGFSGPRGDLGVPGSKGSAGVP
GVPGEHGRYGAQGEKGAHGEIFGASPGPPGDAGLPGLQGNKGLTGDPGEQGYPGMGGMPG
MIGSRGERGPLGLQGEEGRPGPAGKYGYPGDPGRAGPPGPRGGTGQPGLPGERGTEGDPG
PPGPIGLKGNPGTYGNDGAFGEHGPSGEMGKPGADGRPGLPGMKGYKGSSGLPGFEGNRG
NKGVKGFSGFIGESGLPGQVGLKGVKGRSGEKGDRGLRGAPGDKPHIPAQMIVDMKGTKG
DQGHLGNQGFTGPRGVKGLPGVPGYDGTHGPPGNPGNKKGYHGDPGAEGLQGMKGMPGLT
GNQGITGFDGMPGNRGIKGSPGAYGATGDKGRKGVKGDTGPRIDLPGTTGLRGEHGSPGE
PGQKGLIGQPGDRGTPGFGGIDGRKGESGEPGISGYPGSDGQKGTPGNQGQKGFPGTPGK
DGHPGFPGFPGNKGFPGLKGLYGLHGLKGTKGIPGTPGLDTIGPAGESGIKGEKGEGGDP
NSQPGAPGTAGLKGFQGPLGDHGQPGPPGLRGPVGPNGTPDRPGPSGDPGYKGPKGYQGF
PGAKGFPGVDAPPGEKGVPGVHGFPGLPGRKGFKGDQGSFGYRGPNGVSGKKGVKGEQGV
MGVPGVTGVKGERGPSGPKGNTGPTGVRGIPGDQGPLPIPIRIPGERGPPGPHGIQGPKG
VKGETGPQGPPGDTGFMGPIGQKGMPGIGGRSGTPGFRGELGQMGHPGLQGMEGHRGNPG
IRGLPGMPGRSVSVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLA
GSCLPRFNSMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEGEIKPYISRCSVCE
APSVAIAIHSQDITIPQCPAGWRSLWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTTP
FIECNGAKGTCHYFANKHSFWLTSVDQSFHTEPASETLKAGQLLSRISRCQVCMKNL
NT seq
5034 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggaccatgcaaggacaacacaacagaggactgaagaacctgaggctgctgctt
ctgtgcctctccattgccatcctcgcctcaggagtgcacgcgggtgggaagaaggacagt
ggcccgtgtggaggaagagactgcagcggaggctgtcaatgtttcccagagaagggtgcc
aggggtcaccctggtcctctaggtcctcagggctcccaggggcctccagggagaccaggt
gatccaggcatccaaggaccaaaggggcagaagggtgaccgcggccgtagtggcatcata
ggtcctaaaggaaatgtgggaatgaccggcgttcctgggttttctggaagtgatggcatt
cctggccatccaggacaagctgggccaaggggaaggccaggtgcagacggctgtaacggg
acacacggagaatcagggttaatggggcaacccggctataatggcgcacctggttttcct
ggacagccaggctggaagggacagaagggagactctctggagctcactgtgtacatggag
cgcttcaggggagatccaggcacaccagggcccaacggaagatttgggcctcaaggaaac
ccaggacaccagggtcacataggcttcccaggtccaaagggtcccccagggcctccaggt
ccccgtggaccaaagggcactatgaccaaagtgcttaagggactccgaggagacgacggg
gaagccggaccgccagggctgccaggaaactcatcagctcatcagcaaattaagcccccc
tacggcctcccgggacctcgtggtgagaaaggtctgaaaggaaacataggagatccggct
gacaacaaaggtgaaacaggtgtgatgggattccctggatcacggggtccatctggtgca
gatgggcgtcctggaccaaggggggattttggtgaacaaggaccaaaaggcagagatggt
cctaagggagtcagaggtgacccgggagaactgatttcatcaggaaactggccctggatt
tcaggagctggtcctaccggtcctcctggtgagcagggtccacagggagagagaggcccg
gttggaaaccaaggcttccccggacccccaggacgccccgcctctgaaacacagcaacaa
gtttgggatttcatggggccatttggtatgaagggagagccaggagataagggccaacca
ggggatccaggacgccctgctgacagggcaggacccccaggctctagcgggcgcccgggg
gtcaggggccctccaggacccaaaggaacatgggctgagttcttcaagggggctcctggt
gggagaggaaggcctggcaatgcaggctataaaggactgaaaggtgatcatgggttgtgt
gaatgcaccattgtaaactctccaccggggctacctggacctgccggtgaccgcggtgat
gctgggatgaccggagagtttggtcaggagggtgatttaggagaaccaggtccccaagga
gacaacggattccctggacctcctgggctcagtggtgtgctgggccaaaaaggtcggaaa
ggcgaaccaagtgtggcctcacagaaaggatatcctggagacccaggggatcacgggcga
gatggtgagacgggagcgtttggcgctccgggccaaaatggtttgcctggtatccctggg
agccgaggtcttccaggagaaggtgccagaggagaacctggagacaaaggtttcccaggt
cggcctggtcgacccggtgcacccgggctaagtggagaagaaggtaaagtccttggggga
gtcaagggccaacgtggtttacccggtgacgatggccacgcgggctataacggagttcca
ggaacacctggcaccccaggcggctgtagtccaacaggagatggaggacaggtggatgtt
acaggtccttgtgatgctgttccaggacctccggggctgcctggacctccaggacccagt
ggattaccaggtctcccaggtcagcctggccaaaaaggaccacagggcccacatggagca
catggagagaaaggagaaaaaggagatcaaggcatgggtggccatcctggaccaccaggt
ttttccggcccccgtggagacttgggggttcctggcagcaaaggttcagcaggagtccct
ggtgtgcccggtgagcacggtcggtacggggcacaaggtgagaagggtgctcacggagag
atctttggagcatcaccaggaccccccggagacgcagggctgcctgggcttcaagggaat
aaaggcctaaccggtgatccaggagagcaaggctatccaggaatgggcggcatgcctggt
atgatcggctccaggggtgagaggggccctctgggcctgcagggggaggaagggaggcca
gggccagcgggcaagtacggttaccctggtgatcctggacgagcaggtcctcctgggccg
cgtggtggtaccggacagccaggtttacccggagagaggggaactgaaggagacccggga
cctccaggtccaattggattaaaaggcaacccagggacctacggtaatgatggtgccttt
ggagagcatggcccatcaggtgaaatgggaaagcctggtgcagatggacgcccaggactt
ccaggaatgaagggatacaaagggtcttcaggcttgccagggtttgagggtaacaggggc
aataaaggggtgaagggcttcagcgggttcattggggaatctggattgccgggccaagtt
ggcttaaaaggagtgaagggtcgaagtggagagaaaggtgatcgtggtttgagaggggca
cccggagacaagcctcacatccccgcccagatgattgttgacatgaagggaacaaaggga
gaccaggggcatttgggaaatcaaggtttcaccgggccaagaggtgttaagggtttgccc
ggtgtgccaggctacgatggaacccatggtcctcctggaaaccccggcaataagaaaggt
taccatggagatccaggagcagaggggctgcaggggatgaaaggaatgcctggccttact
ggaaatcaaggaattacgggtttcgatggaatgccaggcaacaggggaattaaaggaagt
cctggtgcctatggcgcaacaggagacaaaggaaggaagggagtcaaaggtgacacaggg
ccgcgcatagaccttccaggaaccactggattgagaggagagcatggttctcctggagag
ccaggccagaaaggattgattggacaaccaggggacaggggaacacctggttttggtgga
atcgatggaagaaagggagagtcaggtgaaccaggaatatcagggtacccaggctctgat
gggcagaagggaactcctggtaaccaaggtcagaaaggctttcctggaacgcctggaaaa
gatggacatccgggttttcctggcttcccaggaaacaaagggttccccggcctgaaaggt
ctttatggattacatggactgaaaggaacaaagggtatccctggaacaccaggtctggat
accattggaccagctggggaatcaggaatcaaaggagagaagggagagggtggtgacccc
aacagccaaccaggtgctcctggcacagcgggtttaaaaggcttccagggacctctaggt
gaccatggtcaacctggaccgccaggattacgcggccctgtaggaccgaacgggacccca
gacagaccaggacccagtggggatcctggttataaaggacctaaagggtaccaaggtttc
ccaggagccaaaggatttcctggtgtggatgctccccctggagaaaaaggtgtaccagga
gtacatgggtttcctggactccctggaaggaaaggatttaaaggagatcaaggttcattt
ggatacagggggccaaatggtgtctctgggaagaaaggagtgaaaggagagcaaggagtg
atgggagttcctggtgttactggtgtgaagggagaaagagggccatctggtccaaaagga
aacactggaccaacaggtgttcgtgggatcccaggagaccagggtcctcttccaattccc
attagaattccaggagagagaggccctccaggtccgcatggtatccaaggaccaaagggg
gtcaaaggggaaacagggccacagggcccccctggggatacagggttcatgggacccatt
gggcagaagggcatgccggggattggtggtagatcaggaacgcctggatttcgtggagag
cttggacaaatgggccaccccggtctgcaaggcatggaaggtcaccgtggaaaccctggt
atccgcgggttacctggtatgcctggccgcagcgtcagcgtgggttacttgctggtgaaa
cacagtcaatcagagcagacgcccatgtgtcctgtgggcatgtcgaaactgtgggacggc
tacagtctgctgtactttgagggccaggaaaaggcccacaatcaggatcttggtttggct
ggctcctgcctcccacggttcaacagcatgcccttcctgtactgcaatcctggagacatt
tgttactatgccagcagaaatgataagtcctactggctgtcgacgactgctcctcttccc
atgatgcctgtagaagagggagagatcaaaccgtatatcagccgctgctcagtatgcgaa
gctccatcagttgccatcgcaatccacagccaggacatcaccatcccacagtgtcctgcg
ggctggcgcagcctgtggatcggctactccttcctcatgcacacagcagcaggaaatgaa
ggcggaggtcagtccttgtcgtcgcctggctcctgcctggaggacttccgcacaacacca
ttcattgagtgtaacggggccaaaggcacatgccactactttgctaacaagcacagcttc
tggctaacctccgtagatcagtcgttccacactgagccggcatcagagacgctcaaagca
ggccagctcctgtcacgcatcagccgctgccaagtctgcatgaagaacttgtga
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integrated database retrieval system
