KEGG   Sander lucioperca (pikeperch): 116046840
Entry
116046840         CDS       T07345                                 
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
sluc  Sander lucioperca (pikeperch)
Pathway
sluc04510  Focal adhesion
sluc04512  ECM-receptor interaction
sluc04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sluc00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    116046840 (col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    116046840 (col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    116046840 (col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sluc04147]
    116046840 (col4a1)
   00536 Glycosaminoglycan binding proteins [BR:sluc00536]
    116046840 (col4a1)
Exosome [BR:sluc04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   116046840 (col4a1)
Glycosaminoglycan binding proteins [BR:sluc00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   116046840 (col4a1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 116046840
NCBI-ProteinID: XP_031151150
LinkDB
Position
8:18622894..18670514
AA seq 1641 aa
MLLPSGTLLLLAALYSSVDLTGAEGCGTSCGKCDCSGVKGAKGERGFPGLQGNMGFPGMQ
GPEGPPGSMGPTGGLGEPGAPGLKGVRGPPGLPGFPGNPGLPGINGNDGPPGSPGIPGCN
GTKGDRGRDGTPGFDGLQGPPGIPGLPGMKGDPGGVIGIVPLKGDKGFPGTPGLPGSSGI
PGPIGPPGPRGYQGPKGDPGPPGLPGEKGDKLAFVSEKGDKGAQGVRGPPGPPGPPPFGA
ERSPITVHVPGPQGDRGLSGDKGDKGQCILHQAGVKGEPGPSGPRGKPGKDGEDGLKGEK
GFPGSYGLTGSQGEKGERGPPGHGSGSPGAPGPRGLPGLNGEKGFPGPQGEAGPPGRHIE
GPRGETGQKGNVGEKGDSGLEGESLVGPPGQPGNTGPPGPPGQPIDPNECDIEKGAPGPP
GPQGLQGELGQKGDRGDTCVQCEGFGPPGLPGPQGPKGDRGPPGLVGGKGEKGGFGPPGQ
PGRPGSAGSPGLIGAPGAVGEPGDIFGGTGLKGDKGLPGVPGSPGQPGKDGQPGREGLPG
IPGFKGEPAKEGIKGERGPEGDPGLIGPPGERGPPGLPGFGRPGEPGEKGSQGRPGIPGH
PGPSGAKGEPGKGVSTPGPQGVPGARGENGIPGLQGDRGLQGDPGLPGFPGQKGEHGSSG
IGFPGPTGPKGISGIPGAPGLPGEPGRPGQDGLTGKTGTPGQKGEPGRGLPGPKGSQGPP
GITGFPGDKGGVGLPGIPGQEGQTGPPGPQGVKGDLGPPGPPGLVGLPGAPGKGSPGAPG
PQGQAGEPGPYGREGVKGEKGYPGPPGLDMPGPQGEKGTPGFPGSPGPKGLPGLQGLPGR
DGLIGNQGSKGEMGVMGTPGVPGFPGPPGTQGSPGLRGDPGITGPRGNDGETGAKGERGD
RGLQGPPGNMSEVDMEHMKGEKGDVGNPGDPGFAGDKGHRGLPGNPGMPGKDGEPGLPGQ
PGEKGDPGFPGEPGSRGQPGQKGAVGEMGIPGPSGPKGSKGDIGTPGHHGFRGTDGQKGD
KGTAGDPGIGLPGHPGERGQTGQPGFPGPPGERGLKGLEGMPGKPGLQGTKGDKGAIGYS
GQPGRPGEKGIPGLPGSVGETGQDGRPGEGGLQGPPGVPGEKGEPGVDGIPGSSGERGDP
GAPGRGFPGPPGVLGGKGDKGSPGFPGPPGHPGVSGIKGDKGLPGSQGAQGETGERGLPG
ISLEGPKGERGETGQPGEAGSSGVPGPSGVPGRNGQKGDKGDQGLPGFQGESGHKGDPGV
SGLPGQSGLPGIDGQKGERGLQGVPGFPGTRGTFGDIGFKGEVGDRGFPGEKGSVGPPGP
PGPSTIIKGDIGFPGPHGLPGPQGPSGLPGQKGLQGVTGIPGPKGEDGIPGYHGQPGSKG
DPGLPGPQGPRGHPGPPGPDGVPGQVGLPGPSSMDHGFLVTRHSQTVEVPHCPEGTSLIY
DGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEP
MPMSMAPITGEGIKPFISRCSVCEAPAMVIAIHSQTIMIPPCPHGWDSLWIGYSFVMHTS
AGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDNEMFTKPVPT
TLKAGNLRTHISRCQVCMKRT
NT seq 4926 nt   +upstreamnt  +downstreamnt
atgctgttaccgtccggcaccctgttactgctggcggctctctactcaagtgtagacctg
acaggggctgagggctgtgggacatcatgtggaaaatgtgactgcagtggtgtgaaagga
gcaaagggtgagcgtggatttcctggtcttcaaggtaatatgggatttccagggatgcag
ggacctgaagggcctccaggatcaatgggccctacgggaggtctgggtgaacctggagct
cctggactgaaaggagtgcggggtcctcctggtctgccaggtttcccaggaaacccggga
ctaccaggcatcaatggaaatgacggcccaccaggttcgccaggtatcccaggatgcaat
gggactaaaggagatagaggaagggatggcactcctggttttgacgggcttcaaggacct
cctggcatcccaggacttcctggaatgaagggtgaccctggtggtgtgattggaattgtt
cccctgaaaggagacaaaggattccctggaacacctggattacctggatcgagtggaatt
cctggacctattggacctccagggcctcgaggctatcaaggaccaaaaggtgatcctggg
ccccctggcctccctggagagaagggtgacaagctggcctttgtgagtgagaaaggagac
aagggtgcccaaggagttcgtggcccacctggccctcctggacctccaccatttggagcg
gaaagatcacctatcacagtgcacgtacctggaccacagggcgacagaggactttcagga
gacaaaggagacaaaggccagtgcatcctgcatcaagctggtgtcaaaggtgaacccggc
ccgtcaggaccaagaggtaaacctggcaaggatggagaggacgggctgaagggagaaaaa
ggcttccctggatcctatggattgaccggttcccagggtgaaaagggagaaagaggacca
ccaggtcacggtagtggttcccctggtgctcccggtcctcgtggtctcccagggttaaat
ggagaaaaaggttttcctggtcctcagggagaggcaggtccaccaggacggcacattgaa
gggcctcgaggagagacgggtcagaagggaaatgttggggagaaaggagacagtggttta
gaaggagagtctctcgttggacctccgggacaaccaggaaacactggaccacctggacca
cctggacaaccgattgaccctaatgaatgtgacattgagaaaggagctcctggcccacct
ggacctcaagggttacaaggggaattgggacagaagggtgacagaggtgacacctgtgtt
caatgtgaaggcttcggcccacctggattacctggcccccaaggccctaaaggagatcga
ggacctcctgggctagtaggggggaagggagaaaagggtggatttggccctcctggacaa
cctggtagacctggttctgcaggctcccctgggttgattggagcccctggtgctgttggt
gagccaggggacattttcggaggtaccggtctgaagggggacaaaggtctgccgggtgtt
cctggttccccagggcagccagggaaagatggacaaccagggagagaaggcctcccaggt
atacctggcttcaaaggagaaccggccaaagagggcatcaagggtgagcgtggcccagaa
ggggaccctggtcttattgggcctccaggagagaggggtccaccgggcctgccaggcttc
gggcgaccaggagagcctggagagaagggcagtcaggggagaccaggcattcctggccat
cctggaccatctggtgcaaaaggtgagccaggtaaaggtgtgagcactcctggacctcag
ggagtacctggagcacgcggagaaaacggcatacctggacttcaaggcgacagaggcctg
cagggagacccaggtttgccgggtttccctggacagaagggggaacacggatcctctgga
attggatttccaggtccaactggtccgaaaggaatcagtggaattccaggagctccagga
ttaccaggagagccaggaagaccaggacaggatggcttgactggaaaaactggtacacct
ggacaaaaaggtgaaccagggcggggtcttccaggcccaaaaggttcgcagggcccccca
ggaattactggtttcccgggagacaagggtggcgttggactacctggtattcctggacaa
gaaggccagacaggacccccaggacctcagggagtcaaaggtgacttaggacccccggga
cctcctggactggtcggcttaccaggtgctccaggaaaaggttcccccggagcccccggg
ccacaaggacaagctggagagcctggaccatacggtagggaaggtgtaaagggagaaaag
ggctacccaggtcctcctggtctggacatgccggggcctcagggagagaagggaaccccc
gggttcccaggaagcccaggtcctaaaggactgccagggctgcaaggcctaccaggcagg
gatggactgattggaaaccaaggttctaaaggtgaaatgggggtcatggggacaccagga
gtaccaggatttcctggaccacctggtacacaaggatctcctggactaagaggtgatccc
gggattacgggaccaagaggcaatgatggagagactggagctaaaggagaaaggggagat
cgaggtcttcagggacctcctgggaacatgagtgaagttgacatggagcacatgaagggg
gagaagggagatgttggaaacccaggtgaccctgggttcgctggagataagggccaccgt
ggacttcctggtaatcctggaatgccaggcaaagatggagagcctggattacctggacaa
ccaggtgagaaaggagaccctggtttccccggagagcctggaagtaggggacaacctgga
cagaagggcgctgtaggagagatgggaataccaggtccgtctggtccaaagggttctaaa
ggagatattggtacaccgggacatcatggattcagaggcacagatggacagaaaggagac
aagggaacagctggagacccaggtattgggctcccaggacatccaggagaaaggggtcag
actggccagccaggattcccaggaccaccaggagagaggggactgaagggtcttgagggt
atgcctggcaagccaggactgcaaggaaccaagggagacaaaggagccatcgggtattca
ggtcagccaggtagaccaggcgagaagggtatccctgggctgccggggtctgtaggagaa
acaggtcaagacggtcggcctggtgaagggggcttgcagggacctcctggtgttccggga
gaaaagggagaacctggagtggatggcatccctggatcctcaggggagagaggagaccca
ggtgcacccggccgaggttttcccggaccacctggagtgcttggtggcaaaggtgacaaa
ggtagccctggcttccctggccctcctggtcatccaggtgtctctggtatcaaaggcgac
aagggacttccaggctcacagggagcccagggtgagacaggagagagggggctccctggt
atctctctggagggccctaagggagagaggggagaaacaggacaacccggagaagcagga
tcctctggagtaccaggaccctccggtgtgccaggcagaaatggccaaaagggagacaaa
ggagaccagggtctccctggtttccagggagagtcaggacataagggtgaccctggagtt
tctggacttcctggacagtctggtcttccaggtatcgatggacagaagggagagagggga
ttgcagggtgtccctggcttcccaggtacaaggggtactttcggggacattggattcaaa
ggagaagttggagacagaggattcccaggagaaaagggcagtgtaggcccccctggtccc
cctggccccagcaccatcatcaaaggagacatcgggttcccagggcctcatggcctcccg
ggaccccaggggccatctgggctccctggacagaaaggactgcaaggtgtgacaggtatt
ccagggccaaaaggtgaagacggcattcctggatatcacggtcagcctgggtccaaagga
gatcctggccttcctgggccacaaggacccagaggacaccctggccccccaggtcctgac
ggtgttccaggtcaagtgggtctccccggcccctcctccatggatcacgggttcctggta
acccgtcacagccaaacggtggaggttccacactgtcctgagggaacctcgctcatttat
gatggctactccttgctctacgtacaaggcaacgaacgctcccatggacaggacttaggt
acggcaggcagctgtctaagaaagttcagccccatgcccttcctgttctgtaacattaac
aacgtgtgcaactttgcctcccgtaacgactactcctactggctcacctcccctgagccc
atgcccatgagcatggcacccatcactggtgaaggcatcaaaccctttatcagcaggtgt
tctgtgtgtgaagccccagcgatggtgatagcaattcacagtcagaccatcatgatccca
ccatgccctcacggctgggactctctgtggattggctactcctttgtcatgcacaccagt
gctggtgctgagggatcaggccaggctctggcctctcctggttcctgcctggaggaattc
cgcagtgctccattcatcgagtgtcacggtcgtggaacctgcaactactacgccaactcc
tacagcttttggctcgccaccattgaagacaatgagatgtttacgaaacctgtccccaca
acgctaaaagcaggcaatctccgaacacacataagccgctgtcaggtgtgcatgaagagg
acataa

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