Sander lucioperca (pikeperch): 116047048
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Entry
116047048 CDS
T07345
Symbol
rxrba
Name
(RefSeq) retinoic acid receptor RXR-beta-A isoform X1
KO
K08525
retinoid X receptor beta
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03320
PPAR signaling pathway
sluc04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
116047048 (rxrba)
03320 PPAR signaling pathway
116047048 (rxrba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sluc03000
]
116047048 (rxrba)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
sluc03310
]
116047048 (rxrba)
Transcription factors [BR:
sluc03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
116047048 (rxrba)
Nuclear receptors [BR:
sluc03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
116047048 (rxrba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
Motif
Other DBs
NCBI-GeneID:
116047048
NCBI-ProteinID:
XP_031151394
Ensembl:
ENSSLUG00000002724
UniProt:
A0A8C9X9D6
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Position
14:complement(22279066..22302650)
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AA seq
469 aa
AA seq
DB search
MGDSRDSHSPDSSSVSSPPSGQRSPPLVPSAASMTSLPPITTSRVNSPISSIGSPFSVIS
SSLGSPGLPGTPSVGYGPISSPQINSTVSMSGLHAVSSSDDVKPPLGLKQLSCHSPGPML
SQKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKDCMVDKRQRNRCQY
CRYQKCLAMGMKREVATMNDRSVQEERQRNKEREGEVESSSAVNEEMPVEKILEAEMAVE
QKTELHADGSSGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELALDDQVILLRAGW
NELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRAHNAEVGAIFDRVLTEL
VSKMRDMQMDKTELGCLRAIILFNPDAKGLSNPSEVELLRERVYASLESYCKQKYPDQQG
RFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQIT
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgggagacagtagagattcccacagcccagacagttcgtctgtgtcctcccctccatca
ggccagcgctcacctccgctggttccctcagctgcttccatgacctccctgcctcccatc
accacctcaagggtcaacagccccatcagtagcatcggctcccccttttctgtcatcagt
tcttcgctgggctcgcctggtctacctggcacgccatcggtgggctacggccccattagc
agcccacagatcaactcaacagtgtccatgtcagggcttcatgcagtgagcagctccgac
gatgtgaaacctccattaggcttgaagcagctgtcgtgtcacagcccggggccgatgctt
tcccagaaacgcctttgtgccatctgcggagacagatcctctggtaagcactatggtgtc
tacagctgtgagggctgtaaaggcttcttcaagcgcacagtacgcaaagacttgacctac
acttgtcgggacagtaaagactgtatggtggataagagacagaggaaccgctgccaatac
tgccgctaccagaagtgcctggccatgggcatgaagagagaagtggccacgatgaacgac
agatctgtccaagaggaacggcagaggaacaaggaacgagagggcgaggtggagtcgtct
agtgcggtgaacgaggagatgccagtggagaagattttggaagcggagatggctgtagag
caaaagaccgagcttcatgcagacggaagttcaggtggcagctctcccaacgatcctgtc
accaacatctgtcaggcagcagacaagcagctcttcaccctggtggagtgggctaagagg
atccctcacttctctgagctggccctggacgaccaggtcatcctgctacgtgcaggctgg
aatgaactcctgattgcatcgttctctcatcgctccatctcggtgaaggatgggatttta
ttggccaccggcctgcatgtccacaggaacagtgctcacagtgccggtgttggagccatc
tttgacagggcgcacaatgccgaggttggggccatatttgacagagttttgacagaactt
gtaagcaagatgagagacatgcaaatggacaagaccgagctcggctgccttcgagccatc
atcctcttcaacccagatgccaagggattgtccaaccccagcgaggtggagctcctgaga
gagagggtgtacgcatctcttgagtcttactgcaaacagaaataccccgatcagcagggc
aggtttgcaaagctcctcctccggctcccagcactgcgctccattggtctgaagtgcctg
gagcacctgttcttctttaaactgatcggagacacgcccatcgacaccttcctgatggag
atgttagaggcgcctcaccagatcacctag
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