Sander lucioperca (pikeperch): 116047536
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Entry
116047536 CDS
T07345
Symbol
lrfn1
Name
(RefSeq) leucine-rich repeat and fibronectin type III domain-containing protein 1
KO
K16354
leucine-rich repeat and fibronectin type-III domain-containing protein 1
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sluc04515
]
116047536 (lrfn1)
04990 Domain-containing proteins not elsewhere classified [BR:
sluc04990
]
116047536 (lrfn1)
Cell adhesion molecules [BR:
sluc04515
]
Immunoglobulin superfamily
SALM family
116047536 (lrfn1)
Domain-containing proteins not elsewhere classified [BR:
sluc04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
116047536 (lrfn1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
Ig_3
I-set
LRR_4
LRR_5
Ig_2
fn3
ig
LRR_9
Ig_DSCAM-DSCAML_C
C2-set_3
Sp38
LRRCT
DUF4834
Motif
Other DBs
NCBI-GeneID:
116047536
NCBI-ProteinID:
XP_031152227
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Position
5:complement(9150099..9297945)
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AA seq
758 aa
AA seq
DB search
MDRLILCVLLCAVLVKGYSCPGRCICQHLSPTLTLLCAKTGLLFVPPTIDRKTVELRLTD
NFITIIRRKDFFNMTSLVHLTLSRNTISQVTPHAFVGLRSLRALHMDGNRLSVIKTDYFK
GLINLRHLILGNNQIHQVAPTSFDEFVSTIEDLDLSNNNLRTLPWEAIARMTNINTLTLD
HNLIDHIGAGTFTLLTKLVRLDMTSNRLQKLPPDSLFQHAQVLSEPTGSSSSTLAVSFGG
NPLHCNCELLWLRRLTREDDLETCASPEHLMDKYFWSIQEEEFICEPPLITKHLSTKPFV
MEGQGVTLKCKAVGDPDPEIHWRSPDGKLVHNNSRTILYDNGTLDILITTLKDSGAFNCV
ASNAAGIATAAVEINMIPLPLFVNNTGHMREDPGLSDITTSSKSGNDTKGYDKQDRRVMV
TELTSSSAVLRWPSERHIPGIRMYQIQYNSTADDTLVYRMIPSTSKNFLINDLAAGREYD
LCVLAVYDDGITSLTATRVVGCVQFHTASEVSQCRFMHSQFLGGTMIIIIGGIIVASVLV
FIIILMIRYKAYSSPEDGKTKVSSSMHSQTNGSQQRLQRSASKQPSDEGQREAHTPKECM
ALVLRVDNEKKEDPAAITATLEVELPPLSVEKMKRRTSLDAQCSGPPSEDTQTDSSLTGS
TMSLCLIGPNAGTKEAPRLKDKKAALANMGLLPNELARTRHRFSFDGGDYSIFQSHSYPR
RARTRWHKSTNQLNMESSPLANRRVTFSSTEWMLESTV
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggaccggctgattctgtgtgtgctgctgtgtgcagtcctagtgaagggatacagctgc
cccggccgctgtatctgtcagcacctctcccccactctgactctgctctgtgctaagact
ggtctgttgtttgtgccccccaccatcgaccgcaagaccgtggagctgcggctcacggac
aacttcatcaccatcatccgcaggaaagactttttcaacatgactagtttggtccacctc
accttgtcccgtaacaccatcagccaggtcaccccccacgccttcgtcggcctgagatcg
ctgcgggcgctccacatggatggcaaccgcctcagtgtgataaagacggactactttaaa
ggcctcatcaacctgcggcacctcatcctgggaaacaaccagatccaccaggtggccccc
acctcctttgatgagtttgtttccaccatagaggacttggatctttccaataacaacctg
cgcacccttccctgggaagccatagcacgaatgaccaacattaacacgctcacgctggac
cacaacctgatcgaccacattggagcggggacttttacgctgctcaccaagctggtccgc
ctggacatgacgtcaaacaggctgcagaagctgccgccagacagcctgttccagcacgcg
caggtcctgtccgagcccacgggctccagctcctccacgctggcggtgagcttcggggga
aaccctctccactgtaactgcgagctgctgtggctccgcaggctgacgagagaggatgat
ctggagacctgtgcctcgccagagcacctcatggacaaatatttctggtcgatccaagag
gaggagtttatctgtgagcctccactgatcaccaaacatctttccactaagccctttgtg
atggaaggccagggtgttactctgaaatgcaaagcagtgggtgatccagacccagagatt
cactggcgctcaccagatggcaagctggtgcataataactcccgcaccatcctgtatgat
aatggcacccttgatattctcatcaccacgctgaaggacagcggggcatttaattgtgtg
gcgtccaatgccgcaggcatcgccacagctgctgtcgagatcaacatgatccccttaccc
ttgtttgttaacaacacaggccacatgcgtgaggacccgggcctctcagacatcaccacc
tcctccaaatctggcaatgacaccaaaggctacgacaagcaggacaggagggtgatggtc
actgagctgacctcctcctccgctgtactccgttggccatctgagcgccatatccccggc
atcaggatgtaccagattcagtacaacagcacggcagatgatactttggtgtacagaatg
atcccatctaccagcaagaacttcttaatcaatgatctggccgcggggcgggagtatgac
ctttgtgtgctggcggtttacgacgacggcatcacatcgctaacggccacacgtgtggtc
ggctgtgtgcagttccacacagccagtgaggtcagccagtgccgcttcatgcacagccag
ttcctgggaggcactatgatcatcattattggtggtataattgttgcttcagtgctggtg
ttcattatcattctgatgatccgttacaaggcctacagcagcccagaggacggcaagacc
aaggtcagctccagcatgcactcgcagaccaatggcagccagcagcggctgcagcgctcc
gcctccaagcaaccgtctgacgagggtcagcgggaagctcacacgcccaaagagtgcatg
gcgctggttctgagggtggacaatgagaagaaggaggatccagcagccatcactgccacc
ctggaggtggagctgccacccctgagtgtagaaaagatgaagagaagaaccagcctggat
gcacagtgctccggccccccatctgaggacacgcagacggacagtagcctgacgggctcc
accatgtccctgtgtctcataggccccaacgctggcaccaaggaggctcccaggcttaag
gacaagaaagctgccctggccaacatgggattgctcccaaatgagctggcacgaactagg
cacagattctcttttgatgggggggattactccatttttcagagtcatagttacccacgc
agagcgaggacgaggtggcacaagtccaccaaccagctcaacatggagtcatcgccgctc
gccaacaggagagttacattcagcagcactgagtggatgcttgagagcacagtctga
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